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    LOC4332921 pyrrolidone-carboxylate peptidase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332921, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4332921
    Gene description
    pyrrolidone-carboxylate peptidase
    Locus tag
    OSNPB_030367900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in milk grains (RPKM 31.9), leaves before flowering (RPKM 22.7) and 6 other tissues See more
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    Genomic context

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    See LOC4332921 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (14431493..14435286)

    Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene F-box/kelch-repeat protein At3g23880 Neighboring gene SWR1 complex subunit 6 Neighboring gene peroxidase 2 Neighboring gene peroxidase 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables pyroglutamyl-peptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4332921
    Names
    Os03g0367900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

      Range
      14431493..14435286
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015776557.2 → XP_015632043.1  uncharacterized protein LOC4332921

      UniProtKB/TrEMBL
      A0A5S6RAK9, B8AQ74, Q0DRN9, Q10KW4, Q9FRE4
      Conserved Domains (1) summary
      cd00501
      Location:9 → 217
      Peptidase_C15; Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I: Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins. The N-terminal pGlu protects these proteins from ...

    2. XM_015776558.2 → XP_015632044.1  uncharacterized protein LOC4332921

      UniProtKB/TrEMBL
      A0A5S6RAK9, B8AQ74, Q0DRN9, Q10KW4, Q9FRE4
      Conserved Domains (1) summary
      cd00501
      Location:9 → 217
      Peptidase_C15; Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I: Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins. The N-terminal pGlu protects these proteins from ...

    3. XM_026024102.1 → XP_025879887.1  uncharacterized protein LOC4332921

      UniProtKB/TrEMBL
      A0A5S6RAK9, B8AQ74, Q0DRN9, Q10KW4, Q9FRE4
      Conserved Domains (1) summary
      cd00501
      Location:9 → 217
      Peptidase_C15; Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I: Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins. The N-terminal pGlu protects these proteins from ...
    Nucleotide Protein
    Heading Accession and Version

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