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    LOC4332931 novel plant SNARE 13 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332931, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4332931
    Gene description
    novel plant SNARE 13
    Locus tag
    OSNPB_030369800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    NPSN12
    Expression
    Ubiquitous expression in roots before flowering (RPKM 31.2), leaves before flowering (RPKM 29.5) and 6 other tissues See more
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    Genomic context

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    See LOC4332931 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (14514212..14518543, complement)

    Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene peroxidase 2 Neighboring gene pentatricopeptide repeat-containing protein At1g28690, mitochondrial Neighboring gene pyruvate dehydrogenase (acetyl-transferring) kinase, mitochondrial Neighboring gene uncharacterized LOC4332933

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Cloning and characterization of three genes encoding Qb-SNARE proteins in rice. Bao YM, et al. Mol Genet Genomics, 2008 Mar. PMID 18197419
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables SNAP receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables SNARE binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vesicle fusion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in ER to Golgi transport vesicle membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of SNARE complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in late endosome membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    novel plant SNARE 13
    Names
    Os03g0369800
    SNARE 12

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

      Range
      14514212..14518543 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015777842.2 → XP_015633328.1  novel plant SNARE 13 isoform X2

      UniProtKB/TrEMBL
      A0A5S6RDJ2, A2XH67, Q0DRM9, Q10KU8, Q5XQQ6, Q9FRD2
      Conserved Domains (1) summary
      cd15861
      Location:146 → 208
      SNARE_SNAP25N_23N_29N_SEC9N; N-terminal SNARE motif of SNAP25, SNAP23, SNAP29, and SEC9

    2. XM_015777841.2 → XP_015633327.1  novel plant SNARE 13 isoform X1

      UniProtKB/TrEMBL
      A2XH67
      Conserved Domains (2) summary
      pfam17021
      Location:19 → 85
      Mei5_like; Putative double-strand recombination repair-like
      cl22856
      Location:146 → 248
      SNARE; SNARE motif
    Nucleotide Protein
    Heading Accession and Version

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