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    LOC4324627 coiled-coil domain-containing protein 25 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324627, updated on 31-May-2023

    Summary

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    Gene symbol
    LOC4324627
    Gene description
    coiled-coil domain-containing protein 25
    Locus tag
    OSNPB_010750500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in roots before flowering (RPKM 14.9), flowers (RPKM 3.0) and 2 other tissues See more
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (31453226..31457558, complement)

    Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene cellulose synthase A catalytic subunit 4 [UDP-forming]-like Neighboring gene receptor-like protein 51 Neighboring gene proline-rich receptor-like protein kinase PERK2 Neighboring gene uncharacterized LOC4324629

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    coiled-coil domain-containing protein 25
    Names
    Os01g0750500
    P0046E05.12

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

      Range
      31453226..31457558 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015766923.2 → XP_015622409.1  coiled-coil domain-containing protein 25

      UniProtKB/TrEMBL
      A0A0P0V8B2, B9EZP2, Q943H0
      Conserved Domains (1) summary
      pfam05670
      Location:1 → 112
      DUF814; Domain of unknown function (DUF814)
    Nucleotide Protein
    Heading Accession and Version

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