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    LOC4341262 60S ribosomal protein L11-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341262, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4341262
    Gene description
    60S ribosomal protein L11-like
    Locus tag
    OSNPB_060550000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 62.0), flowers (RPKM 43.2) and 6 other tissues See more
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    Genomic context

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    See LOC4341262 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (20851110..20853827, complement)

    Chromosome 6 - NC_029261.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9271874 Neighboring gene berberine bridge enzyme-like 18 Neighboring gene small nucleolar RNA snoR117 Neighboring gene uncharacterized LOC4341263 Neighboring gene uncharacterized LOC107281172

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029261.1 Chromosome 6 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytosolic large ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    60S ribosomal protein L11-like
    Names
    60S ribosomal protein L11
    Os06g0550000
    P0659D09.25
    putative 60S ribosomal protein L11-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029261.1 Reference IRGSP-1.0 Primary Assembly

      Range
      20851110..20853827 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015785601.2 → XP_015641087.1  60S ribosomal protein L11-like

      UniProtKB/Swiss-Prot
      A2YDY2, B7EI57, O22540, Q0DBM5, Q0DK10, Q60EZ4
      UniProtKB/TrEMBL
      A0A0P0WXQ4, B8AZ52
      Conserved Domains (1) summary
      PTZ00156
      Location:4 → 175
      PTZ00156; 60S ribosomal protein L11; Provisional
    Nucleotide Protein
    Heading Accession and Version

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