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    LOC4333568 protein WHAT'S THIS FACTOR 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333568, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4333568
    Gene description
    protein WHAT'S THIS FACTOR 1
    Locus tag
    OSNPB_030646200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4333568 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (25001609..25003479, complement)

    Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like Neighboring gene cell division protein FtsZ homolog 2-1, chloroplastic Neighboring gene probable cyclic nucleotide-gated ion channel 6 Neighboring gene sigma intracellular receptor 2 Neighboring gene DNA-directed RNA polymerase II subunit RPB2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein WHAT'S THIS FACTOR 1
    Names
    Os03g0646200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

      Range
      25001609..25003479 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015776054.1 → XP_015631540.1  protein WHAT'S THIS FACTOR 1

      UniProtKB/TrEMBL
      B9FA09, Q0DQ07, Q10G25
      Conserved Domains (1) summary
      pfam11955
      Location:34 → 351
      PORR; Plant organelle RNA recognition domain
    Nucleotide Protein
    Heading Accession and Version

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