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    LOC4341571 probable glucomannan 4-beta-mannosyltransferase 9 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341571, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4341571
    Gene description
    probable glucomannan 4-beta-mannosyltransferase 9
    Locus tag
    OSNPB_060625700
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    CSLA9; OsCslA9; OsJ_22033; OsJ_021176
    Expression
    Broad expression in flower buds (RPKM 7.5), milk grains (RPKM 4.3) and 4 other tissues See more
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    Genomic context

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    See LOC4341571 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (25231174..25235897)

    Chromosome 6 - NC_029261.1Genomic Context describing neighboring genes Neighboring gene protein LYK5 Neighboring gene stromal processing peptidase, chloroplastic-like Neighboring gene peroxiredoxin-2E-1, chloroplastic-like Neighboring gene pentatricopeptide repeat-containing protein At4g16470 Neighboring gene potassium transporter 10-like Neighboring gene uncharacterized LOC112939414

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029261.1 Chromosome 6 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mannan synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable glucomannan 4-beta-mannosyltransferase 9
    Names
    Cellulose synthase-like protein A9
    Glucomannan synthase
    LOC_Os06g42020
    Mannan synthase 9
    OSJNBa0072A21.15
    probable mannan synthase 9
    putative glycosyltransferase 1
    XP_015643705.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001421652.1 → NP_001408581.1  probable glucomannan 4-beta-mannosyltransferase 9

      Status: VALIDATED

      Source sequence(s)
      AK242831, CI650271
      UniProtKB/Swiss-Prot
      B9FQ03, Q0DAU5, Q67VS7, Q944E5
      UniProtKB/TrEMBL
      B8B0E3

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029261.1 Reference IRGSP-1.0 Primary Assembly

      Range
      25231174..25235897
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015788219.2 → XP_015643705.1  probable glucomannan 4-beta-mannosyltransferase 9

      UniProtKB/Swiss-Prot
      Q67VS7
      Conserved Domains (1) summary
      cd06437
      Location:92 → 328
      CESA_CaSu_A2; Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q67VS7.1 GenPept UniProtKB/Swiss-Prot:Q67VS7

    Gene LinkOut

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    Molecular Biology Databases