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    LOC4341259 berberine bridge enzyme-like 28 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341259, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4341259
    Gene description
    berberine bridge enzyme-like 28
    Locus tag
    OSNPB_060549600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4341259 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (20808189..20810053, complement)

    Chromosome 6 - NC_029261.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA R71 Neighboring gene berberine bridge enzyme-like 22 Neighboring gene berberine bridge enzyme-like 8 Neighboring gene uncharacterized LOC9271874

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029261.1 Chromosome 6 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables FAD binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    berberine bridge enzyme-like 28
    Names
    Os06g0549600
    P0659D09.11
    putative CPRD2
    tetrahydrocannabinolic acid synthase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029261.1 Reference IRGSP-1.0 Primary Assembly

      Range
      20808189..20810053 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015786270.2 → XP_015641756.1  berberine bridge enzyme-like 28

      UniProtKB/TrEMBL
      A0A0P0WXT8, A3BCK9, Q5Z957
      Conserved Domains (3) summary
      COG0277
      Location:73 → 255
      GlcD; FAD/FMN-containing dehydrogenase [Energy production and conversion]
      pfam01565
      Location:77 → 216
      FAD_binding_4; FAD binding domain
      pfam08031
      Location:460 → 520
      BBE; Berberine and berberine like
    Nucleotide Protein
    Heading Accession and Version

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