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    LOC4347175 flavonoid 3'-monooxygenase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347175, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4347175
    Gene description
    flavonoid 3'-monooxygenase
    Locus tag
    OSNPB_090441100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1344_B01.34
    Expression
    Restricted expression toward roots before flowering (RPKM 1.2) See more
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    Genomic context

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    See LOC4347175 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (16361323..16363295, complement)

    Chromosome 9 - NC_029264.1Genomic Context describing neighboring genes Neighboring gene copper transporter 5.1-like Neighboring gene subtilisin-like protease SBT1.8 Neighboring gene cytochrome P450 71A1 Neighboring gene cytochrome P450 71A1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029264.1 Chromosome 9 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables heme binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables iron ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables monooxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    flavonoid 3'-monooxygenase
    Names
    Os09g0441100
    putative cytochrome P450 monooxygenase CYP92A1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029264.1 Reference IRGSP-1.0 Primary Assembly

      Range
      16361323..16363295 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015755888.2 → XP_015611374.1  flavonoid 3'-monooxygenase

      UniProtKB/TrEMBL
      A0A0P0XME0, A3BZ94, Q69P77
      Conserved Domains (1) summary
      cd20618
      Location:68 → 509
      CYP71_clan; Plant cytochrome P450s, clan CYP71
    Nucleotide Protein
    Heading Accession and Version

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