LOC4341573 potassium transporter 10-like [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4341573
Gene description: potassium transporter 10-like
Locus tag: OSNPB_060625900
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: HAK10; OsHAK10
Expression: Broad expression in flowers (RPKM 36.5), flower buds (RPKM 30.4) and 5 other tissues See more
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Genomic context

Location:: chromosome: 6

Exon count:: 9

Annotation release	Status	Assembly	Chr	Location
102	current	IRGSP-1.0 (GCF_001433935.1)	6	NC_029261.1 (25238179..25242691, complement)

Chromosome 6 - NC_029261.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:: NC_029261.1 Chromosome 6 Reference IRGSP-1.0 Primary Assembly

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables potassium ion transmembrane transporter activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in potassium ion transmembrane transport	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: potassium transporter 10

Names: LOC_Os06g42030; OSJNBa0072A21.17; Os06g0626050; putative potasium transporter; putative potassium transporter KUP3p

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001421654.1 → NP_001408583.1 potassium transporter 10

Status: VALIDATED

Source sequence(s)

AJ427972, CB664024, CI228916

UniProtKB/Swiss-Prot

Q0DAU3, Q67VS5, Q8VXB3, Q8VXB9

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

NC_029261.1 Reference IRGSP-1.0 Primary Assembly

Range

25238179..25242691 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_015788218.1 → XP_015643704.1 potassium transporter 10

UniProtKB/Swiss-Prot

Q67VS5

Conserved Domains (1) summary

cl15781
Location:18 → 843

K_trans; K+ potassium transporter