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    LOC9266117 cytosolic sulfotransferase 8 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9266117, updated on 3-Apr-2024

    Summary

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    Gene symbol
    LOC9266117
    Gene description
    cytosolic sulfotransferase 8
    Locus tag
    OSNPB_060626466
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0530H05.3
    Expression
    Broad expression in flowers (RPKM 2.6), flower buds (RPKM 1.7) and 5 other tissues See more
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    Genomic context

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    See LOC9266117 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (25289075..25293328, complement)

    Chromosome 6 - NC_029261.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At4g16470 Neighboring gene potassium transporter 10-like Neighboring gene uncharacterized LOC112939414 Neighboring gene leucoanthocyanidin dioxygenase 2-like Neighboring gene bZIP transcription factor 11-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029261.1 Chromosome 6 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables sulfotransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in sulfation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cytosolic sulfotransferase 8
    Names
    OSJNBa0072A21.32
    Os06g0626466
    Os06g0626600
    putative steroid sulfotransferase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001421655.1 → NP_001408584.1  cytosolic sulfotransferase 8

      Status: VALIDATED

      Source sequence(s)
      AK109408, AP014962
      UniProtKB/TrEMBL
      B9EWT7

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029261.1 Reference IRGSP-1.0 Primary Assembly

      Range
      25289075..25293328 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015786057.2 → XP_015641543.1  cytosolic sulfotransferase 8

      UniProtKB/TrEMBL
      B9EWT7, Q0DAU1, Q67VR8
      Conserved Domains (1) summary
      cl21551
      Location:51 → 348
      Sulfotransfer_1; Sulfotransferase domain

    2. XM_015786054.2 → XP_015641540.1  cytosolic sulfotransferase 8

      UniProtKB/TrEMBL
      B9EWT7, Q0DAU1, Q67VR8
      Conserved Domains (1) summary
      cl21551
      Location:51 → 348
      Sulfotransfer_1; Sulfotransferase domain

    3. XM_015786050.2 → XP_015641536.1  cytosolic sulfotransferase 8

      UniProtKB/TrEMBL
      B9EWT7, Q0DAU1, Q67VR8
      Conserved Domains (1) summary
      cl21551
      Location:51 → 348
      Sulfotransfer_1; Sulfotransferase domain

    4. XM_015786042.2 → XP_015641528.1  cytosolic sulfotransferase 8

      UniProtKB/TrEMBL
      B9EWT7, Q0DAU1, Q67VR8
      Conserved Domains (1) summary
      cl21551
      Location:51 → 348
      Sulfotransfer_1; Sulfotransferase domain

    5. XM_015786051.2 → XP_015641537.1  cytosolic sulfotransferase 8

      UniProtKB/TrEMBL
      B9EWT7, Q0DAU1, Q67VR8
      Conserved Domains (1) summary
      cl21551
      Location:51 → 348
      Sulfotransfer_1; Sulfotransferase domain

    6. XM_015786049.2 → XP_015641535.1  cytosolic sulfotransferase 8

      UniProtKB/TrEMBL
      B9EWT7, Q0DAU1, Q67VR8
      Conserved Domains (1) summary
      cl21551
      Location:51 → 348
      Sulfotransfer_1; Sulfotransferase domain

    7. XM_015786048.2 → XP_015641534.1  cytosolic sulfotransferase 8

      UniProtKB/TrEMBL
      B9EWT7, Q0DAU1, Q67VR8
      Conserved Domains (1) summary
      cl21551
      Location:51 → 348
      Sulfotransfer_1; Sulfotransferase domain

    8. XM_015786058.2 → XP_015641544.1  cytosolic sulfotransferase 8

      UniProtKB/TrEMBL
      B9EWT7, Q0DAU1, Q67VR8
      Conserved Domains (1) summary
      cl21551
      Location:51 → 348
      Sulfotransfer_1; Sulfotransferase domain

    9. XM_015786043.2 → XP_015641529.1  cytosolic sulfotransferase 8

      UniProtKB/TrEMBL
      B9EWT7, Q0DAU1, Q67VR8
      Conserved Domains (1) summary
      cl21551
      Location:51 → 348
      Sulfotransfer_1; Sulfotransferase domain

    10. XM_015786056.2 → XP_015641542.1  cytosolic sulfotransferase 8

      UniProtKB/TrEMBL
      B9EWT7, Q0DAU1, Q67VR8
      Conserved Domains (1) summary
      cl21551
      Location:51 → 348
      Sulfotransfer_1; Sulfotransferase domain

    11. XM_015786040.2 → XP_015641526.1  cytosolic sulfotransferase 8

      UniProtKB/TrEMBL
      B9EWT7, Q0DAU1, Q67VR8
      Conserved Domains (1) summary
      cl21551
      Location:51 → 348
      Sulfotransfer_1; Sulfotransferase domain

    12. XM_015786046.2 → XP_015641532.1  cytosolic sulfotransferase 8

      UniProtKB/TrEMBL
      B9EWT7, Q0DAU1, Q67VR8
      Conserved Domains (1) summary
      cl21551
      Location:51 → 348
      Sulfotransfer_1; Sulfotransferase domain

    13. XM_015786045.2 → XP_015641531.1  cytosolic sulfotransferase 8

      UniProtKB/TrEMBL
      B9EWT7, Q0DAU1, Q67VR8
      Conserved Domains (1) summary
      cl21551
      Location:51 → 348
      Sulfotransfer_1; Sulfotransferase domain

    14. XM_015786044.2 → XP_015641530.1  cytosolic sulfotransferase 8

      UniProtKB/TrEMBL
      B9EWT7, Q0DAU1, Q67VR8
      Conserved Domains (1) summary
      cl21551
      Location:51 → 348
      Sulfotransfer_1; Sulfotransferase domain

    15. XM_015786047.2 → XP_015641533.1  cytosolic sulfotransferase 8

      UniProtKB/TrEMBL
      B9EWT7, Q0DAU1, Q67VR8
      Conserved Domains (1) summary
      cl21551
      Location:51 → 348
      Sulfotransfer_1; Sulfotransferase domain

    16. XM_015786041.2 → XP_015641527.1  cytosolic sulfotransferase 8

      UniProtKB/TrEMBL
      B9EWT7, Q0DAU1, Q67VR8
      Conserved Domains (1) summary
      cl21551
      Location:51 → 348
      Sulfotransfer_1; Sulfotransferase domain
    Nucleotide Protein
    Heading Accession and Version

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