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    LOC4334469 DEAD-box ATP-dependent RNA helicase 27-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334469, updated on 6-Jun-2024

    Summary

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    Gene symbol
    LOC4334469
    Gene description
    DEAD-box ATP-dependent RNA helicase 27-like
    Locus tag
    OSNPB_030802700
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsJ_12997
    Expression
    Ubiquitous expression in flower buds (RPKM 34.1), mature seeds (RPKM 28.3) and 6 other tissues See more
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    Genomic context

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    See LOC4334469 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (33489613..33493527, complement)

    Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4334465 Neighboring gene AAA-ATPase At3g28580 Neighboring gene AAA-ATPase At3g28580 Neighboring gene DDT domain-containing protein DDR4 Neighboring gene transcription factor BHLH089-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DEAD-box ATP-dependent RNA helicase 27
    Names
    LOC_Os03g58810
    OSJNBa0087C10.12
    XP_015631966.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001418843.1 → NP_001405772.1  DEAD-box ATP-dependent RNA helicase 27

      Status: VALIDATED

      Source sequence(s)
      AK288909, CF325885, CI386178, CI519589, CV720579, EL586693
      UniProtKB/Swiss-Prot
      A0A0P0W4K7, Q84T03
      UniProtKB/TrEMBL
      A2XN12

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

      Range
      33489613..33493527 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015776480.1 → XP_015631966.1  DEAD-box ATP-dependent RNA helicase 27

      UniProtKB/Swiss-Prot
      Q84T03
      Conserved Domains (1) summary
      COG0513
      Location:94 → 589
      SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q84T03.1 GenPept UniProtKB/Swiss-Prot:Q84T03

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials