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    LOC4341570 peroxiredoxin-2E-1, chloroplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341570, updated on 3-Apr-2024

    Summary

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    Gene symbol
    LOC4341570
    Gene description
    peroxiredoxin-2E-1, chloroplastic-like
    Locus tag
    OSNPB_060625500
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    PRXIIE-1
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    Genomic context

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    See LOC4341570 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (25214039..25215324)

    Chromosome 6 - NC_029261.1Genomic Context describing neighboring genes Neighboring gene protein LYK5 Neighboring gene protein LYK5 Neighboring gene stromal processing peptidase, chloroplastic-like Neighboring gene probable glucomannan 4-beta-mannosyltransferase 9 Neighboring gene pentatricopeptide repeat-containing protein At4g16470 Neighboring gene potassium transporter 10-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029261.1 Chromosome 6 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables thioredoxin peroxidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell redox homeostasis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cellular response to oxidative stress IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in hydrogen peroxide catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    peroxiredoxin-2E-1, chloroplastic
    Names
    LOC_Os06g42000
    OSJNBa0029G06.40
    OSJNBa0072A21.9
    Peroxiredoxin IIE-1
    Thioredoxin reductase 2E-1
    glutaredoxin-dependent peroxiredoxin
    putative thioredoxin peroxidase 1
    thioredoxin peroxidase 2E-1
    XP_015640940.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402893.1 → NP_001389822.1  peroxiredoxin-2E-1, chloroplastic

      Status: VALIDATED

      Source sequence(s)
      CI168435, CI287900, CI414995, CI693543
      UniProtKB/Swiss-Prot
      B7E2V4, Q69TY4
      UniProtKB/TrEMBL
      A2YF78

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029261.1 Reference IRGSP-1.0 Primary Assembly

      Range
      25214039..25215324
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015785454.2 → XP_015640940.1  peroxiredoxin-2E-1, chloroplastic

      UniProtKB/Swiss-Prot
      Q69TY4
      Conserved Domains (1) summary
      cd03013
      Location:73 → 230
      PRX5_like; Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q69TY4.1 GenPept UniProtKB/Swiss-Prot:Q69TY4

    Gene LinkOut

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