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    LOC4327104 50S ribosomal protein L3-2, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327104, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4327104
    Gene description
    50S ribosomal protein L3-2, chloroplastic
    Locus tag
    OSNPB_010251100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 19.0), flowers (RPKM 15.7) and 6 other tissues See more
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    Genomic context

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    See LOC4327104 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (8291323..8296216)

    Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4327100 Neighboring gene 5'-nucleotidase domain-containing protein 4 Neighboring gene protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic Neighboring gene E3 ubiquitin-protein ligase hel2 Neighboring gene MFS18 protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    • PZA00058_Zea_mays_ssp._parviglumis_Beadle_&_Kato_site_4 (e-PCR)

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of mitochondrial large ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    50S ribosomal protein L3-2, chloroplastic
    Names
    Os01g0251100
    P0434D08.21
    putative ribosomal protein L3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

      Range
      8291323..8296216
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015761895.2 → XP_015617381.1  50S ribosomal protein L3-2, chloroplastic

      UniProtKB/TrEMBL
      A0A8J8YFM9, B8ABS3, B9EUP9, Q0JP15, Q9LIT4
      Conserved Domains (1) summary
      PRK00001
      Location:74 → 283
      rplC; 50S ribosomal protein L3; Validated
    Nucleotide Protein
    Heading Accession and Version

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