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    LOC4326153 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326153, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4326153
    Gene description
    1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic-like
    Locus tag
    OSNPB_010106900
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    DXR; OsJ_00058; P0482C06.2
    Expression
    Broad expression in leaves before flowering (RPKM 137.1), roots before flowering (RPKM 108.7) and 5 other tissues See more
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    Genomic context

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    See LOC4326153 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (374734..380711, complement)

    Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein kinase ATM Neighboring gene RING-box protein 1a Neighboring gene peroxisomal membrane protein PEX14 Neighboring gene serine/threonine-protein kinase HT1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables NADPH binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables manganese ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in isoprenoid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic
    Names
    1-deoxyxylulose-5-phosphate reductoisomerase
    2-C-methyl-D-erythritol 4-phosphate synthase
    DXP reductoisomerase
    LOC_Os01g01710
    P0005A05.24
    putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase
    XP_015618768.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001372199.1 → NP_001359128.1  1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic

      Status: VALIDATED

      Source sequence(s)
      AK099702
      UniProtKB/Swiss-Prot
      A0A0N7KC68, Q0JRD4, Q8W250, Q9FTN0
      UniProtKB/TrEMBL
      A2WJR2
      Conserved Domains (1) summary
      PLN02696
      Location:24 → 473
      PLN02696; 1-deoxy-D-xylulose-5-phosphate reductoisomerase

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

      Range
      374734..380711 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015763282.1 → XP_015618768.1  1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic

      UniProtKB/Swiss-Prot
      Q8W250
      Conserved Domains (1) summary
      PLN02696
      Location:24 → 473
      PLN02696; 1-deoxy-D-xylulose-5-phosphate reductoisomerase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8W250.2 GenPept UniProtKB/Swiss-Prot:Q8W250

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