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    LOC4339191 probable sugar phosphate/phosphate translocator At4g32390 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339191, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4339191
    Gene description
    probable sugar phosphate/phosphate translocator At4g32390
    Locus tag
    OSNPB_050494500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots before flowering (RPKM 143.6), flowers (RPKM 102.9) and 6 other tissues See more
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    Genomic context

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    See LOC4339191 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (24287565..24289607)

    Chromosome 5 - NC_029260.1Genomic Context describing neighboring genes Neighboring gene cytochrome P450 98A1 Neighboring gene dr1-associated corepressor Neighboring gene cysteine proteinase inhibitor 2-like Neighboring gene EID1-like F-box protein 3 Neighboring gene uncharacterized LOC107278338

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029260.1 Chromosome 5 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables antiporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in trans-Golgi network IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable sugar phosphate/phosphate translocator At4g32390
    Names
    Os05g0494500

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029260.1 Reference IRGSP-1.0 Primary Assembly

      Range
      24287565..24289607
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015783824.2 → XP_015639310.1  probable sugar phosphate/phosphate translocator At4g32390

      UniProtKB/TrEMBL
      A0A0P0WNX8, A2WW31, B9FK70, Q65X78
      Conserved Domains (1) summary
      cl26744
      Location:18 → 312
      TPT; Triose-phosphate Transporter family
    Nucleotide Protein
    Heading Accession and Version

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