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    LOC9270114 uncharacterized LOC9270114 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9270114, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC9270114
    Gene description
    uncharacterized LOC9270114
    Locus tag
    OSNPB_040284100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 9.2), flowers (RPKM 8.8) and 6 other tissues See more
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    Genomic context

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    See LOC9270114 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (12220807..12228793, complement)

    Chromosome 4 - NC_029259.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4335376 Neighboring gene leucine-rich repeat extensin-like protein 5 Neighboring gene uncharacterized LOC112938693 Neighboring gene uncharacterized LOC4335379

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029259.1 Chromosome 4 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in centromere complex assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Mis6-Sim4 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in kinetochore IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC9270114
    Names
    Os04g0284100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029259.1 Reference IRGSP-1.0 Primary Assembly

      Range
      12220807..12228793 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015778392.2 → XP_015633878.1  uncharacterized protein LOC9270114 isoform X2

      Conserved Domains (1) summary
      pfam09496
      Location:191 → 397
      CENP-O; Cenp-O kinetochore centromere component

    2. XM_015778391.2 → XP_015633877.1  uncharacterized protein LOC9270114 isoform X1

      Conserved Domains (1) summary
      pfam09496
      Location:200 → 406
      CENP-O; Cenp-O kinetochore centromere component
    Nucleotide Protein
    Heading Accession and Version

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