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    LOC4341158 leaf-specific thionin [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341158, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4341158
    Gene description
    leaf-specific thionin
    Locus tag
    OSNPB_060517700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in flower buds (RPKM 10.7) and flowers (RPKM 2.3) See more
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    Genomic context

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    See LOC4341158 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (18955482..18956533, complement)

    Chromosome 6 - NC_029261.1Genomic Context describing neighboring genes Neighboring gene leaf-specific thionin Neighboring gene uncharacterized LOC112939384 Neighboring gene uncharacterized LOC9271270 Neighboring gene uncharacterized LOC107281215 Neighboring gene zinc finger CCCH domain-containing protein 43-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029261.1 Chromosome 6 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in defense response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    leaf-specific thionin
    Names
    OSJNBa0020P04.23
    Os06g0517700
    putative thionin Osthi1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029261.1 Reference IRGSP-1.0 Primary Assembly

      Range
      18955482..18956533 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015787294.2 → XP_015642780.1  leaf-specific thionin

      UniProtKB/TrEMBL
      B7F9T5, Q5Z5V1
      Conserved Domains (1) summary
      pfam00321
      Location:30 → 69
      Thionin; Plant thionin
    Nucleotide Protein
    Heading Accession and Version

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