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    LOC4324466 probable Histone-lysine N-methyltransferase ATXR5 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324466, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4324466
    Gene description
    probable Histone-lysine N-methyltransferase ATXR5
    Locus tag
    OSNPB_010965500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flowers (RPKM 4.9), flower buds (RPKM 3.3) and 6 other tissues See more
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    Genomic context

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    See LOC4324466 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (42567792..42573080)

    Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112937632 Neighboring gene uridylate kinase Neighboring gene coiled-coil domain-containing protein R3HCC1L Neighboring gene uncharacterized LOC4324468

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable Histone-lysine N-methyltransferase ATXR5
    Names
    Os01g0965500
    P0458E05.18

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

      Range
      42567792..42573080
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015776902.2 → XP_015632388.1  probable Histone-lysine N-methyltransferase ATXR5 isoform X1

      Conserved Domains (2) summary
      cd15545
      Location:70 → 114
      PHD_BAZ2A_like; PHD finger found in bromodomain adjacent to zinc finger domain protein 2A (BAZ2A) and 2B (BAZ2B)
      pfam00856
      Location:267 → 365
      SET; SET domain

    2. XM_015776910.2 → XP_015632396.1  probable Histone-lysine N-methyltransferase ATXR5 isoform X2

      UniProtKB/TrEMBL
      A3A1U9, B8A9M3, Q8LHD6
      Conserved Domains (2) summary
      cd15545
      Location:70 → 114
      PHD_BAZ2A_like; PHD finger found in bromodomain adjacent to zinc finger domain protein 2A (BAZ2A) and 2B (BAZ2B)
      cd10539
      Location:248 → 385
      SET_ATXR5_6-like; SET domain found in fungal protein lysine methyltransferase SET5 and similar protein
    Nucleotide Protein
    Heading Accession and Version

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