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    LOC4325867 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1, chloroplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325867, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4325867
    Gene description
    CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1, chloroplastic-like
    Locus tag
    OSNPB_010789100
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0557A01.8
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 6.9), flowers (RPKM 5.2) and 6 other tissues See more
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    Genomic context

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    See LOC4325867 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (33489284..33493004, complement)

    Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene RNA-binding protein PNO1 Neighboring gene F-box/LRR-repeat protein At4g14103 Neighboring gene probable serine/threonine-protein kinase PBL23 Neighboring gene transfer RNA phenylalanine (anticodon GAA)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cardiolipin synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cardiolipin biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1, chloroplastic; cDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1, chloroplastic
    Names
    PGP synthase 1
    Phosphatidylglycerophosphate synthase 1
    phosphatidylglycerotransferase-like protein
    XP_015625107.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001372196.1 → NP_001359125.1  cDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1, chloroplastic

      Status: VALIDATED

      Source sequence(s)
      AK069910, CI511515
      UniProtKB/Swiss-Prot
      A0A0N7KDW1, Q5N9A1
      UniProtKB/TrEMBL
      B8AAI3
      Conserved Domains (1) summary
      PLN02794
      Location:1 → 329
      PLN02794; cardiolipin synthase

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

      Range
      33489284..33493004 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015769621.2 → XP_015625107.1  CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1, chloroplastic

      UniProtKB/Swiss-Prot
      Q5N9A1
      Conserved Domains (1) summary
      PLN02794
      Location:1 → 329
      PLN02794; cardiolipin synthase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5N9A1.1 GenPept UniProtKB/Swiss-Prot:Q5N9A1

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