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    LOC4335384 glutathione S-transferase T2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4335384, updated on 18-Aug-2023

    Summary

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    Gene symbol
    LOC4335384
    Gene description
    glutathione S-transferase T2
    Locus tag
    OSNPB_040286400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 13.0), roots after flowering (RPKM 12.4) and 6 other tissues See more
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    Genomic context

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    See LOC4335384 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (12382014..12387299)

    Chromosome 4 - NC_029259.1Genomic Context describing neighboring genes Neighboring gene wall-associated receptor kinase-like 6 Neighboring gene uncharacterized LOC107277941 Neighboring gene uncharacterized LOC112938573 Neighboring gene protein ALP1-like Neighboring gene disease resistance protein RPM1-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029259.1 Chromosome 4 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    glutathione S-transferase T2
    Names
    Os04g0286400
    Os04g0286500

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029259.1 Reference IRGSP-1.0 Primary Assembly

      Range
      12382014..12387299
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026024814.1 → XP_025880599.1  glutathione S-transferase T2

      UniProtKB/TrEMBL
      A0A0P0W848, B8BCY2, Q0JEE5
      Conserved Domains (1) summary
      pfam13837
      Location:151 → 212
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

    2. XM_015781031.2 → XP_015636517.1  glutathione S-transferase T2

      UniProtKB/TrEMBL
      A0A0P0W848, B8BCY2, Q0JEE5
      Conserved Domains (1) summary
      pfam13837
      Location:151 → 212
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

    3. XM_026024811.1 → XP_025880596.1  glutathione S-transferase T2

      UniProtKB/TrEMBL
      A0A0P0W848, B8BCY2, Q0JEE5
      Conserved Domains (1) summary
      pfam13837
      Location:151 → 212
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

    4. XM_015781030.2 → XP_015636516.1  glutathione S-transferase T2

      UniProtKB/TrEMBL
      A0A0P0W848, B8BCY2, Q0JEE5
      Conserved Domains (1) summary
      pfam13837
      Location:151 → 212
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

    5. XM_026024812.1 → XP_025880597.1  glutathione S-transferase T2

      UniProtKB/TrEMBL
      A0A0P0W848, B8BCY2, Q0JEE5
      Conserved Domains (1) summary
      pfam13837
      Location:151 → 212
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

    6. XM_026024813.1 → XP_025880598.1  glutathione S-transferase T2

      UniProtKB/TrEMBL
      A0A0P0W848, B8BCY2, Q0JEE5
      Conserved Domains (1) summary
      pfam13837
      Location:151 → 212
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

    7. XM_015781029.2 → XP_015636515.1  glutathione S-transferase T2

      UniProtKB/TrEMBL
      A0A0P0W848, B8BCY2, Q0JEE5
      Conserved Domains (1) summary
      pfam13837
      Location:151 → 212
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

    8. XM_015781028.2 → XP_015636514.1  glutathione S-transferase T2

      UniProtKB/TrEMBL
      A0A0P0W848, B8BCY2, Q0JEE5
      Conserved Domains (1) summary
      pfam13837
      Location:151 → 212
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

    9. XM_015781027.2 → XP_015636513.1  glutathione S-transferase T2

      UniProtKB/TrEMBL
      A0A0P0W848, B8BCY2, Q0JEE5
      Conserved Domains (1) summary
      pfam13837
      Location:151 → 212
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain
    Nucleotide Protein
    Heading Accession and Version

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