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    LOC4341468 phospholipase D alpha 2-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341468, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4341468
    Gene description
    phospholipase D alpha 2-like
    Locus tag
    OSNPB_060604300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0481H08.3
    Expression
    Broad expression in roots before flowering (RPKM 11.6), flowers (RPKM 2.9) and 4 other tissues See more
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    Genomic context

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    Location:
    chromosome: 6
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (23921924..23924921)

    Chromosome 6 - NC_029261.1Genomic Context describing neighboring genes Neighboring gene ethylene-responsive transcription factor WIN1 Neighboring gene uncharacterized LOC9269995 Neighboring gene phospholipase D alpha 2-like Neighboring gene phospholipase D alpha 2-like Neighboring gene calcium-binding mitochondrial carrier protein SCaMC-1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029261.1 Chromosome 6 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. The chloroplast-localized phospholipases D α4 and α5 regulate herbivore-induced direct and indirect defenses in rice. Qi J, et al. Plant Physiol, 2011 Dec. PMID 21984727, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. OsPLDalpha4 and -alpha5 are involved in rice herbivore defense.
      Title: The chloroplast-localized phospholipases D α4 and α5 regulate herbivore-induced direct and indirect defenses in rice.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phospholipase D activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in phosphatidylcholine metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in phospholipid catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    phospholipase D alpha 2-like
    Names
    Os06g0604300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029261.1 Reference IRGSP-1.0 Primary Assembly

      Range
      23921924..23924921
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015785910.2 → XP_015641396.1  phospholipase D alpha 2-like

      UniProtKB/TrEMBL
      A3BDD5, Q69X21, Q9LKM2
      Conserved Domains (1) summary
      PLN02270
      Location:1 → 842
      PLN02270; phospholipase D alpha
    Nucleotide Protein
    Heading Accession and Version

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