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    LOC4339188 cytochrome P450 98A1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339188, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4339188
    Gene description
    cytochrome P450 98A1
    Locus tag
    OSNPB_050494000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flowers (RPKM 124.6), leaves after flowering (RPKM 110.4) and 6 other tissues See more
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    Genomic context

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    See LOC4339188 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (24271083..24275164)

    Chromosome 5 - NC_029260.1Genomic Context describing neighboring genes Neighboring gene WAT1-related protein At5g07050 Neighboring gene cyclin-B1-5-like Neighboring gene dr1-associated corepressor Neighboring gene cysteine proteinase inhibitor 2-like Neighboring gene probable sugar phosphate/phosphate translocator At4g32390

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029260.1 Chromosome 5 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables heme binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables iron ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables monooxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cytochrome P450 98A1
    Names
    Os05g0494000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029260.1 Reference IRGSP-1.0 Primary Assembly

      Range
      24271083..24275164
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015784465.2 → XP_015639951.1  cytochrome P450 98A1

      UniProtKB/TrEMBL
      A0A0P0WNZ0, A2Y626, B9FK67, Q0DH37, Q65X81
      Conserved Domains (1) summary
      cd20656
      Location:62 → 493
      CYP98; cytochrome P450 family 98
    Nucleotide Protein
    Heading Accession and Version

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