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    LOC4339782 RGG repeats nuclear RNA binding protein A [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339782, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4339782
    Gene description
    RGG repeats nuclear RNA binding protein A
    Locus tag
    OSNPB_050589600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 110.2), flowers (RPKM 73.3) and 6 other tissues See more
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    Genomic context

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    See LOC4339782 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (29355975..29359196)

    Chromosome 5 - NC_029260.1Genomic Context describing neighboring genes Neighboring gene transfer RNA valine (anticodon AAC) Neighboring gene transcription factor MYBS3-like Neighboring gene inactive protein kinase SELMODRAFT_444075 Neighboring gene aspartyl protease family protein 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029260.1 Chromosome 5 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RGG repeats nuclear RNA binding protein A
    Names
    Os05g0589600

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029260.1 Reference IRGSP-1.0 Primary Assembly

      Range
      29355975..29359196
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015784484.2 → XP_015639970.1  RGG repeats nuclear RNA binding protein A

      UniProtKB/TrEMBL
      A0A0P0WRL1, A2Y828, Q6I5E4, Q6L561
      Conserved Domains (2) summary
      pfam04774
      Location:161 → 273
      HABP4_PAI-RBP1; Hyaluronan / mRNA binding family
      pfam09598
      Location:42 → 67
      Stm1_N
    Nucleotide Protein
    Heading Accession and Version

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