U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    CG1316 [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 38526, updated on 4-Apr-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    CG1316provided by FlyBase
    Primary source
    FLYBASE:FBgn0035526
    Locus tag
    Dmel_CG1316
    See related
    AllianceGenome:FB:FBgn0035526
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    cg1316; Dmel\CG1316
    Summary
    Predicted to enable mRNA binding activity. Is expressed in adult head and organism. Orthologous to human RBM45 (RNA binding motif protein 45). [provided by Alliance of Genome Resources, Apr 2022]
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    64A12-64A12; 3-10 cM
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (4283851..4286865)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (4283851..4286865)

    Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene Choline transporter-like 1 Neighboring gene uncharacterized protein Neighboring gene shrew Neighboring gene Transcription factor IIEbeta Neighboring gene Hexosaminidase 1 Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Conservation of gene order, structure and sequence between three closely linked genes in Drosophila melanogaster and Drosophila virilis. Lyamouri M, et al. Gene, 2002 Jan 9. PMID 11814692
    2. A novel method for quantifying the rate of embryogenesis uncovers considerable genetic variation for the duration of embryonic development in Drosophila melanogaster. Horváth B, et al. BMC Evol Biol, 2016 Oct 7. PMID 27717305, Free PMC Article
    3. A genetic screen in Drosophila for regulators of human prostate cancer progression. Ito S, et al. Biochem Biophys Res Commun, 2014 Sep 5. PMID 25117438
    4. Amyloidogenic Oligomerization Transforms Drosophila Orb2 from a Translation Repressor to an Activator. Khan MR, et al. Cell, 2015 Dec 3. PMID 26638074, Free PMC Article
    5. Zinc Finger RNA-Binding Protein Zn72D Regulates ADAR-Mediated RNA Editing in Neurons. Sapiro AL, et al. Cell Rep, 2020 May 19. PMID 32433963, Free PMC Article

    See all (33) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables mRNA binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    uncharacterized protein
    Names
    CG1316-PA

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_037436.4 Reference assembly

      Range
      4283851..4286865
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_139630.3 → NP_647887.1  uncharacterized protein Dmel_CG1316 [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_647887.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VZE4
      Related
      FBpp0073089
      Conserved Domains (4) summary
      cd12366
      Location:25 → 105
      RRM1_RBM45; RNA recognition motif 1 in RNA-binding protein 45 (RBM45) and similar proteins
      cd12367
      Location:122 → 195
      RRM2_RBM45; RNA recognition motif 2 in RNA-binding protein 45 (RBM45) and similar proteins
      cd12368
      Location:267 → 339
      RRM3_RBM45; RNA recognition motif 3 in RNA-binding protein 45 (RBM45) and similar proteins
      cd12369
      Location:383 → 449
      RRM4_RBM45; RNA recognition motif 4 in RNA-binding protein 45 (RBM45) and similar proteins
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9VZE4 Q9VZE4

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools
    Miscellaneous