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    Fam13c family with sequence similarity 13, member C [ Mus musculus (house mouse) ]

    Gene ID: 71721, updated on 5-Mar-2024

    Summary

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    Official Symbol
    Fam13cprovided by MGI
    Official Full Name
    family with sequence similarity 13, member Cprovided by MGI
    Primary source
    MGI:MGI:1918971
    See related
    Ensembl:ENSMUSG00000043259 AllianceGenome:MGI:1918971
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    mKIAA1796; 1200015N20Rik; C030038O19Rik
    Summary
    Is expressed in nasal cavity epithelium; olfactory cortex marginal layer; olfactory epithelium; and telencephalon ventricular layer. Orthologous to human FAM13C (family with sequence similarity 13 member C). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Broad expression in frontal lobe adult (RPKM 7.6), cortex adult (RPKM 5.7) and 16 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Fam13c in Genome Data Viewer
    Location:
    10 B5.3; 10 36.68 cM
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (70274981..70394566)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (70439972..70558736)

    Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_27079 Neighboring gene predicted gene, 40687 Neighboring gene predicted gene, 33704 Neighboring gene STARR-seq mESC enhancer starr_27081 Neighboring gene STARR-seq mESC enhancer starr_27082 Neighboring gene STARR-seq mESC enhancer starr_27083 Neighboring gene putative 60S ribosomal protein L39-like 5 Neighboring gene 60S ribosomal protein L35 pseudogene Neighboring gene phytanoyl-CoA hydroxylase interacting protein-like Neighboring gene RIKEN cDNA D630013N20 gene Neighboring gene expressed sequence BB187676 Neighboring gene predicted gene, 51772

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Database resources of the National Center for Biotechnology Information. Wheeler DL, et al. Nucleic Acids Res, 2001 Jan 1. PMID 11125038, Free PMC Article
    2. BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Stryke D, et al. Nucleic Acids Res, 2003 Jan 1. PMID 12520002, Free PMC Article
    3. BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. Magdaleno S, et al. PLoS Biol, 2006 Apr. PMID 16602821, Free PMC Article
    4. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    5. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article

    See all (15) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

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    Markers

    Homology

    Clone Names

    • KIAA1796

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    protein FAM13C

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001143776.2 → NP_001137248.1  protein FAM13C isoform 2

      See identical proteins and their annotated locations for NP_001137248.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate in-frame splice site in the 3' coding region, compared to variant 1. The resulting isoform (2) lacks one internal residue, compared to isoform 1.
      Source sequence(s)
      AC079681, AC122896
      Consensus CDS
      CCDS56709.1
      UniProtKB/TrEMBL
      A1L311, Q8BLV7
      Related
      ENSMUSP00000134648.2, ENSMUST00000173042.9

    2. NM_001143777.2 → NP_001137249.1  protein FAM13C isoform 3

      See identical proteins and their annotated locations for NP_001137249.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) has an alternate 5' splice pattern and uses a downstream start codon, compared to variant 1. The resulting isoform (3) has a shorter N-terminus, compared to isoform 1.
      Source sequence(s)
      AC079681, AC122896
      Consensus CDS
      CCDS48592.1
      UniProtKB/TrEMBL
      A1L311, G3X9S1
      Related
      ENSMUSP00000101076.3, ENSMUST00000105436.9

    3. NM_001359551.2 → NP_001346480.1  protein FAM13C isoform 4

      Status: VALIDATED

      Source sequence(s)
      AC079681, AC122896
      UniProtKB/TrEMBL
      A1L311

    4. NM_024244.5 → NP_077206.3  protein FAM13C isoform 1

      See identical proteins and their annotated locations for NP_077206.3

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longest isoform (1).
      Source sequence(s)
      AC079681, AC122896
      Consensus CDS
      CCDS35932.1
      UniProtKB/Swiss-Prot
      D3YTZ3, Q9DBR2
      UniProtKB/TrEMBL
      A1L311
      Related
      ENSMUSP00000051375.7, ENSMUST00000062883.7

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000076.7 Reference GRCm39 C57BL/6J

      Range
      70274981..70394566
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036156020.1 → XP_036011913.1  protein FAM13C isoform X2

    2. XM_030245285.2 → XP_030101145.1  protein FAM13C isoform X2

    3. XM_017314101.3 → XP_017169590.1  protein FAM13C isoform X1

      UniProtKB/TrEMBL
      A1L311, G3X9S1

    4. XM_036156022.1 → XP_036011915.1  protein FAM13C isoform X3

    5. XM_036156021.1 → XP_036011914.1  protein FAM13C isoform X3

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9DBR2.2 GenPept UniProtKB/Swiss-Prot:Q9DBR2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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