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    LOC4347242 probable N-succinyldiaminopimelate aminotransferase DapC [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347242, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4347242
    Gene description
    probable N-succinyldiaminopimelate aminotransferase DapC
    Locus tag
    OSNPB_090453800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsIDI4
    Expression
    Ubiquitous expression in roots before flowering (RPKM 92.9), flower buds (RPKM 43.3) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 9
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (17024577..17028460)

    Chromosome 9 - NC_029264.1Genomic Context describing neighboring genes Neighboring gene nuclear pore complex protein NUP58 Neighboring gene dipeptidyl aminopeptidase BI Neighboring gene radial spoke head 10 homolog B Neighboring gene RHOMBOID-like protein 10, chloroplastic

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029264.1 Chromosome 9 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Expression of iron-acquisition-related genes in iron-deficient rice is co-ordinately induced by partially conserved iron-deficiency-responsive elements. Kobayashi T, et al. J Exp Bot, 2005 May. PMID 15781441
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables kynurenine-oxoglutarate transaminase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pyridoxal phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4347242
    Names
    Os09g0453800
    P0488D02.27
    aminotransferase
    putative cysteine conjugate beta-lyase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029264.1 Reference IRGSP-1.0 Primary Assembly

      Range
      17024577..17028460
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015756331.1 → XP_015611817.1  uncharacterized protein LOC4347242

      UniProtKB/TrEMBL
      A0A0P0XNW8, B9G3Z1, Q67UZ0
      Conserved Domains (1) summary
      PLN00175
      Location:81 → 465
      PLN00175; aminotransferase family protein; Provisional
    Nucleotide Protein
    Heading Accession and Version

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