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    CG42322 [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 42455, updated on 19-Jun-2024

    Summary

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    Official Symbol
    CG42322provided by FlyBase
    Primary source
    FLYBASE:FBgn0259222
    Locus tag
    Dmel_CG42322
    See related
    AllianceGenome:FB:FBgn0259222
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG15688; CG15689; CG15690; CG31203; Dmel\CG42322
    Old locus tag
    Dmel_CG15690; Dmel_CG31203
    Summary
    Is expressed in adult head. Orthologous to human SLC35F3 (solute carrier family 35 member F3) and SLC35F4 (solute carrier family 35 member F4). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    See CG42322 in Genome Data Viewer
    Location:
    92F10-92F12; 3-69 cM
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (20740108..20756639)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (16565830..16582361)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene mir-995 stem loop Neighboring gene uncharacterized protein Neighboring gene Cyclin-dependent kinase 2 Neighboring gene uncharacterized protein Neighboring gene Proteasome alpha4 subunit, Testis-specific 1 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene Syncrip Neighboring gene Tak1-like 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The β-alanine transporter BalaT is required for visual neurotransmission in Drosophila. Han Y, et al. Elife, 2017 Aug 14. PMID 28806173, Free PMC Article
    2. Integrating GWAS and Transcriptomics to Identify the Molecular Underpinnings of Thermal Stress Responses in Drosophila melanogaster. Lecheta MC, et al. Front Genet, 2020. PMID 32655626, Free PMC Article
    3. The Identification and Evolutionary Trends of the Solute Carrier Superfamily in Arthropods. Denecke SM, et al. Genome Biol Evol, 2020 Aug 1. PMID 32681801, Free PMC Article
    4. A phylogenetic analysis between humans and D. melanogaster: A repertoire of solute carriers in humans and flies. Ceder MM, et al. Gene, 2022 Jan 30. PMID 34673204
    5. Genome-wide identification and characterization of tissue-specific RNA editing events in D. melanogaster and their potential role in regulating alternative splicing. Mazloomian A, et al. RNA Biol, 2015. PMID 26512413, Free PMC Article

    See all (25) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables antiporter activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables nucleotide-sugar transmembrane transporter activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    involved_in nucleotide-sugar transmembrane transport ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG42322-PD
    CG42322-PI
    CG42322-PJ
    CG42322-PL
    CG42322-PM
    CG42322-PN

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      20740108..20756639
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_169920.2 → NP_732549.2  uncharacterized protein Dmel_CG42322, isoform N [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_732549.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A4V362
      Conserved Domains (1) summary
      COG0697
      Location:245 → 527
      RhaT; Permease of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism, Amino acid transport and metabolism, General function prediction only]

    2. NM_001144618.3 → NP_001138090.1  uncharacterized protein Dmel_CG42322, isoform J [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001138090.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      B7Z0N3
      Conserved Domains (1) summary
      COG0697
      Location:245 → 527
      RhaT; Permease of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism, Amino acid transport and metabolism, General function prediction only]

    3. NM_001144617.3 → NP_001138089.1  uncharacterized protein Dmel_CG42322, isoform I [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001138089.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      B7Z0N3
      Conserved Domains (1) summary
      COG0697
      Location:245 → 527
      RhaT; Permease of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism, Amino acid transport and metabolism, General function prediction only]

    4. NM_001144619.3 → NP_001138091.2  uncharacterized protein Dmel_CG42322, isoform M [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001138091.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      B7Z0N2, Q8T0M8
      Conserved Domains (1) summary
      COG0697
      Location:245 → 527
      RhaT; Permease of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism, Amino acid transport and metabolism, General function prediction only]

    5. NM_001260282.2 → NP_001247211.1  uncharacterized protein Dmel_CG42322, isoform L [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001247211.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      B7Z0N2, Q8T0M8
      Conserved Domains (1) summary
      COG0697
      Location:245 → 527
      RhaT; Permease of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism, Amino acid transport and metabolism, General function prediction only]

    6. NM_169921.2 → NP_732550.1  uncharacterized protein Dmel_CG42322, isoform D [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_732550.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      B7Z0N2, Q8T0M8
      Related
      FBpp0289046
      Conserved Domains (1) summary
      COG0697
      Location:245 → 527
      RhaT; Permease of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism, Amino acid transport and metabolism, General function prediction only]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A4V362 A4V362
    B7Z0N3 B7Z0N3
    Q8T0M8 Q8T0M8

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