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    Fam241b family with sequence similarity 241 member B [ Rattus norvegicus (Norway rat) ]

    Gene ID: 294499, updated on 5-Mar-2024

    Summary

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    Official Symbol
    Fam241bprovided by RGD
    Official Full Name
    family with sequence similarity 241 member Bprovided by RGD
    Primary source
    RGD:1305587
    See related
    Ensembl:ENSRNOG00000000551 AllianceGenome:RGD:1305587
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1305587
    Summary
    Predicted to be integral component of membrane. Predicted to be active in intracellular membrane-bounded organelle. Orthologous to human FAM241B (family with sequence similarity 241 member B). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Kidney (RPKM 153.0), Liver (RPKM 149.7) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Fam241b in Genome Data Viewer
    Location:
    20q11
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 20 NC_086038.1 (30595082..30598007, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 20 NC_051355.1 (30052315..30055247, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 20 NC_005119.4 (31734297..31736115, complement)

    Chromosome 20 - NC_086038.1Genomic Context describing neighboring genes Neighboring gene peptidylprolyl cis/trans isomerase, NIMA-interacting 4, pseudogene 1 Neighboring gene uncharacterized LOC134483806 Neighboring gene neurogenin 3 Neighboring gene uncharacterized LOC120098925

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    is_active_in intracellular membrane-bounded organelle IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    protein FAM241B
    Names
    uncharacterized protein C10orf35 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001127452.1 → NP_001120924.1  protein FAM241B

      See identical proteins and their annotated locations for NP_001120924.1

      Status: PROVISIONAL

      Source sequence(s)
      BC158618
      UniProtKB/TrEMBL
      A6K426, B0BMZ1, F7EPJ6, M0R549
      Related
      ENSRNOP00000000662.4, ENSRNOT00000000662.8
      Conserved Domains (1) summary
      pfam15378
      Location:61 → 91
      DUF4605; Domain of unknown function (DUF4605)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086038.1 Reference GRCr8

      Range
      30595082..30598007 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039098607.2 → XP_038954535.1  protein FAM241B isoform X1

      UniProtKB/TrEMBL
      A6K426, B0BMZ1, F7EPJ6, M0R549
      Conserved Domains (1) summary
      pfam15378
      Location:61 → 91
      DUF4605; Domain of unknown function (DUF4605)

    2. XM_039098609.2 → XP_038954537.1  protein FAM241B isoform X1

      UniProtKB/TrEMBL
      A6K426, B0BMZ1, F7EPJ6, M0R549
      Conserved Domains (1) summary
      pfam15378
      Location:61 → 91
      DUF4605; Domain of unknown function (DUF4605)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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