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    E330020D12Rik Riken cDNA E330020D12 gene [ Mus musculus (house mouse) ]

    Gene ID: 626058, updated on 8-Feb-2024

    Summary

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    Official Symbol
    E330020D12Rikprovided by MGI
    Official Full Name
    Riken cDNA E330020D12 geneprovided by MGI
    Primary source
    MGI:MGI:3761270
    See related
    AllianceGenome:MGI:3761270
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm6648; EG626058; F430003O07Rik
    Summary
    Is expressed in ovary. [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in placenta adult (RPKM 2.4), spleen adult (RPKM 0.9) and 4 other tissues See more
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    Genomic context

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    Location:
    1 G3; 1 65.35 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (153279932..153289979, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (153404186..153414233, complement)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene laminin, gamma 1 Neighboring gene STARR-seq mESC enhancer starr_02683 Neighboring gene predicted pseudogene 8818 Neighboring gene STARR-seq mESC enhancer starr_02688 Neighboring gene STARR-seq mESC enhancer starr_02689 Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:155227105-155227297 Neighboring gene predicted gene, 46246 Neighboring gene STARR-positive B cell enhancer ABC_E5821 Neighboring gene STARR-positive B cell enhancer ABC_E5822 Neighboring gene Shc SH2-domain binding protein 1-like Neighboring gene predicted gene, 25588 Neighboring gene STARR-positive B cell enhancer mm9_chr1:155334650-155334951 Neighboring gene DExH-box helicase 9

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Ovarian gene expression in the absence of FIGLA, an oocyte-specific transcription factor. Joshi S, et al. BMC Dev Biol, 2007 Jun 13. PMID 17567914, Free PMC Article
    2. Characterization of an exchangeable gene trap using pU-17 carrying a stop codon-beta geo cassette. Taniwaki T, et al. Dev Growth Differ, 2005 Apr. PMID 15840001
    3. Exchangeable gene trap using the Cre/mutated lox system. Araki K, et al. Cell Mol Biol (Noisy-le-grand), 1999 Jul. PMID 10512203
    4. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_033736.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC098709, AI508362, AK143622, BY414431

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      153279932..153289979 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001177359.1: Suppressed sequence

      Description
      NM_001177359.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
    Nucleotide Protein Strain
    Heading Accession and Version

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