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    Nrp1 neuropilin 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 246331, updated on 6-Jun-2024

    Summary

    Official Symbol
    Nrp1provided by RGD
    Official Full Name
    neuropilin 1provided by RGD
    Primary source
    RGD:621588
    See related
    Ensembl:ENSRNOG00000010744 AllianceGenome:RGD:621588
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Nrp
    Summary
    Enables semaphorin receptor activity. Involved in negative regulation of axon extension involved in axon guidance and response to wounding. Located in cell surface; growth cone; and neuronal cell body. Human ortholog(s) of this gene implicated in lung non-small cell carcinoma. Orthologous to human NRP1 (neuropilin 1). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Lung (RPKM 672.2), Heart (RPKM 513.5) and 9 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Nrp1 in Genome Data Viewer
    Location:
    19q12
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 19 NC_086037.1 (73256557..73411705)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 19 NC_051354.1 (56359455..56514628)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 19 NC_005118.4 (61332351..61486166)

    Chromosome 19 - NC_086037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102548408 Neighboring gene uncharacterized LOC120098511 Neighboring gene uncharacterized LOC120098512 Neighboring gene uncharacterized LOC102548537 Neighboring gene uncharacterized LOC134483666 Neighboring gene collagen alpha-1(I) chain-like Neighboring gene integrin subunit beta 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables GTPase activator activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables growth factor binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables heparin binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables protein kinase binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables semaphorin receptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables semaphorin receptor activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables semaphorin receptor activity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    enables semaphorin receptor activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables semaphorin receptor activity TAS
    Traceable Author Statement
    more info
    PubMed 
    enables vascular endothelial growth factor binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables vascular endothelial growth factor binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables vascular endothelial growth factor receptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables vascular endothelial growth factor receptor activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables vascular endothelial growth factor receptor activity ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    involved_in VEGF-activated neuropilin signaling pathway ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in angiogenesis IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within angiogenesis ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in angiogenesis ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in angiogenesis involved in coronary vascular morphogenesis ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in artery morphogenesis ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of axon extension ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of axon extension involved in axon guidance ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in axon extension involved in axon guidance ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in axon guidance IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in axon guidance IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within axon guidance ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within axonal fasciculation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in axonogenesis involved in innervation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in basal dendrite arborization ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in basal dendrite development ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within blood vessel endothelial cell migration ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within branching involved in blood vessel morphogenesis ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in branching involved in blood vessel morphogenesis ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in branchiomotor neuron axon guidance ISO
    Inferred from Sequence Orthology
    more info
     
    NOT involved_in cardiac neural crest cell migration involved in outflow tract morphogenesis ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in cell migration involved in sprouting angiogenesis ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in cellular response to hepatocyte growth factor stimulus ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in cellular response to vascular endothelial growth factor stimulus ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in commissural neuron axon guidance ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in coronary artery morphogenesis ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within dendrite development ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within dichotomous subdivision of terminal units involved in salivary gland branching ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in dorsal root ganglion morphogenesis ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in endothelial cell chemotaxis ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in endothelial cell migration ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in facial nerve structural organization ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in facioacoustic ganglion development ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in gonadotrophin-releasing hormone neuronal migration to the hypothalamus ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within heart development ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in hepatocyte growth factor receptor signaling pathway ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in integrin-mediated signaling pathway ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in motor neuron axon guidance ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in motor neuron migration ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in motor neuron migration ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    acts_upstream_of_or_within negative regulation of axon extension ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of axon extension involved in axon guidance IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within negative regulation of axon extension involved in axon guidance ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of extrinsic apoptotic signaling pathway ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of neuron apoptotic process ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in nervous system development NAS
    Non-traceable Author Statement
    more info
    PubMed 
    involved_in neural crest cell migration IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in neural crest cell migration involved in autonomic nervous system development ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in neuron development ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in neuron migration ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in neuropilin signaling pathway ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in otic placode development ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in outflow tract septum morphogenesis ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in platelet-derived growth factor receptor signaling pathway ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive chemotaxis ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of ERK1 and ERK2 cascade ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of angiogenesis ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of axon extension involved in axon guidance ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of cell migration involved in sprouting angiogenesis ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of endothelial cell migration IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in positive regulation of endothelial cell migration ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of filopodium assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in positive regulation of filopodium assembly ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of focal adhesion assembly ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of peptidyl-tyrosine phosphorylation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of phosphorylation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of platelet-derived growth factor receptor signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in positive regulation of smooth muscle cell chemotaxis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in positive regulation of stress fiber assembly ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of substrate adhesion-dependent cell spreading ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of vascular associated smooth muscle cell migration IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in postsynapse organization ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in protein localization to early endosome ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of Cdc42 protein signal transduction ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within regulation of axon extension involved in axon guidance ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of plasma membrane bounded cell projection organization IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in regulation of vascular endothelial growth factor receptor signaling pathway IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in renal artery morphogenesis ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in response to wounding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    acts_upstream_of_or_within retina vasculature development in camera-type eye ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in retina vasculature morphogenesis in camera-type eye ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in retinal ganglion cell axon guidance ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in semaphorin-plexin signaling pathway IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within semaphorin-plexin signaling pathway ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in semaphorin-plexin signaling pathway ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in sensory neuron axon guidance ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in sprouting angiogenesis IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in sprouting angiogenesis ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of substrate-dependent cell migration, cell extension ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in sympathetic ganglion development ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within sympathetic nervous system development ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in sympathetic neuron projection extension ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in sympathetic neuron projection guidance ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in trigeminal ganglion development ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within trigeminal nerve morphogenesis ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in trigeminal nerve structural organization ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in vascular endothelial growth factor receptor signaling pathway IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    acts_upstream_of_or_within vascular endothelial growth factor receptor signaling pathway ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in vascular endothelial growth factor receptor signaling pathway ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in vascular endothelial growth factor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in vasculogenesis IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in ventral trunk neural crest cell migration ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in vestibulocochlear nerve structural organization ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in wound healing IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in axon IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in axon IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in axon ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cell surface IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    located_in early endosome ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in focal adhesion IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in focal adhesion ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in glutamatergic synapse ISO
    Inferred from Sequence Orthology
    more info
     
    located_in growth cone IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in mitochondrial membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in neurofilament ISO
    Inferred from Sequence Orthology
    more info
     
    located_in neuron projection ISO
    Inferred from Sequence Orthology
    more info
     
    located_in neuronal cell body IDA
    Inferred from Direct Assay
    more info
    PubMed 
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in postsynaptic membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in sorting endosome ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    neuropilin-1
    Names
    vascular endothelial cell growth factor 165 receptor

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_145098.2NP_659566.1  neuropilin-1 precursor

      See identical proteins and their annotated locations for NP_659566.1

      Status: PROVISIONAL

      Source sequence(s)
      BC085689
      UniProtKB/Swiss-Prot
      Q9QWJ9
      UniProtKB/TrEMBL
      A6KJ62, Q9QX38
      Related
      ENSRNOP00000014492.3, ENSRNOT00000014492.6
      Conserved Domains (6) summary
      cd06263
      Location:650803
      MAM; Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members ...
      pfam11980
      Location:842919
      DUF3481; Domain of unknown function (DUF3481)
      smart00137
      Location:645804
      MAM; Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others)
      smart00231
      Location:274424
      FA58C; Coagulation factor 5/8 C-terminal domain, discoidin domain
      cd00041
      Location:27140
      CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
      cd00057
      Location:277423
      FA58C; Coagulation factor 5/8 C-terminal domain, discoidin domain; Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086037.1 Reference GRCr8

      Range
      73256557..73411705
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006255825.5XP_006255887.1  neuropilin-1 isoform X1

      See identical proteins and their annotated locations for XP_006255887.1

      UniProtKB/Swiss-Prot
      Q9QWJ9
      UniProtKB/TrEMBL
      A6KJ62, Q9QX38
      Conserved Domains (6) summary
      cd06263
      Location:650803
      MAM; Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members ...
      pfam11980
      Location:842919
      DUF3481; Domain of unknown function (DUF3481)
      smart00137
      Location:645804
      MAM; Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others)
      smart00231
      Location:274424
      FA58C; Coagulation factor 5/8 C-terminal domain, discoidin domain
      cd00041
      Location:27140
      CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
      cd00057
      Location:277423
      FA58C; Coagulation factor 5/8 C-terminal domain, discoidin domain; Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.
    2. XM_063277784.1XP_063133854.1  neuropilin-1 isoform X1

      UniProtKB/Swiss-Prot
      Q9QWJ9
      UniProtKB/TrEMBL
      A6KJ62, Q9QX38
    3. XM_006255827.5XP_006255889.1  neuropilin-1 isoform X3

      UniProtKB/TrEMBL
      A0A8L2R9S2, Q9QX38
      Related
      ENSRNOP00000075034.2
      Conserved Domains (6) summary
      cd06263
      Location:650803
      MAM; Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members ...
      pfam11980
      Location:825902
      DUF3481; Domain of unknown function (DUF3481)
      smart00137
      Location:645804
      MAM; Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others)
      smart00231
      Location:274424
      FA58C; Coagulation factor 5/8 C-terminal domain, discoidin domain
      cd00041
      Location:27140
      CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
      cd00057
      Location:277423
      FA58C; Coagulation factor 5/8 C-terminal domain, discoidin domain; Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.
    4. XM_006255826.5XP_006255888.1  neuropilin-1 isoform X2

      UniProtKB/TrEMBL
      Q9QX38
      Conserved Domains (6) summary
      cd06263
      Location:643796
      MAM; Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members ...
      pfam11980
      Location:835912
      DUF3481; Domain of unknown function (DUF3481)
      smart00137
      Location:638797
      MAM; Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others)
      smart00231
      Location:274424
      FA58C; Coagulation factor 5/8 C-terminal domain, discoidin domain
      cd00041
      Location:27140
      CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
      cd00057
      Location:277423
      FA58C; Coagulation factor 5/8 C-terminal domain, discoidin domain; Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.
    5. XM_063277785.1XP_063133855.1  neuropilin-1 isoform X4

      UniProtKB/TrEMBL
      Q9QX38