GABPA GA binding protein transcription factor alpha subunit [Gallus gallus (chicken)] - Gene

Summary

Symbol: GABPAprovided by CGNC
Full Name: GA binding protein transcription factor alpha subunitprovided by CGNC
Primary source: CGNC:11756
See related: Ensembl:ENSGALG00010010887
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Gallus gallus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 1

Exon count:: 11

Annotation release	Status	Assembly	Chr	Location
106	current	bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2)	1	NC_052532.1 (102651620..102681746)
106	current	bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2)	1	NC_052573.1 (102738795..102768838)

Chromosome 1 - NC_052532.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific	IEA Inferred from Electronic Annotation more info	PubMed
enables sequence-specific DNA binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in cell differentiation	IEA Inferred from Electronic Annotation more info	PubMed
involved_in regulation of transcription by RNA polymerase II	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: GA-binding protein alpha chain

Names: GA binding protein transcription factor subunit alpha; GA binding protein transcription factor, alpha subunit 60kDa; human nuclear respiratory factor-2 subunit alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001007858.1 → NP_001007859.1 GA-binding protein alpha chain

See identical proteins and their annotated locations for NP_001007859.1

Status: PROVISIONAL

Source sequence(s)

AJ720588

UniProtKB/TrEMBL

Q5DWF6, Q5ZJ46

Related

ENSGALP00010014704.1, ENSGALT00010026064.1

Conserved Domains (3) summary

cd08534
Location:168 → 254

SAM_PNT-GABP-alpha; Sterile alpha motif (SAM)/Pointed domain of GA-binding protein (GABP) alpha chain

smart00413
Location:320 → 404

ETS; erythroblast transformation specific domain

pfam11620
Location:40 → 119

GABP-alpha; GA-binding protein alpha chain

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Range

102651620..102681746

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_015299140.4 → XP_015154626.1 GA-binding protein alpha chain isoform X1

UniProtKB/TrEMBL

Q5DWF6, Q5ZJ46

Conserved Domains (3) summary

cd08534
Location:168 → 254

SAM_PNT-GABP-alpha; Sterile alpha motif (SAM)/Pointed domain of GA-binding protein (GABP) alpha chain

smart00413
Location:320 → 404

ETS; erythroblast transformation specific domain

pfam11620
Location:40 → 119

GABP-alpha; GA-binding protein alpha chain
XM_046940249.1 → XP_046796205.1 GA-binding protein alpha chain isoform X1

UniProtKB/TrEMBL

Q5DWF6, Q5ZJ46
XM_046940260.1 → XP_046796216.1 GA-binding protein alpha chain isoform X1

UniProtKB/TrEMBL

Q5DWF6, Q5ZJ46

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Range

102738795..102768838

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_046907883.1 → XP_046763839.1 GA-binding protein alpha chain isoform X1

UniProtKB/TrEMBL

Q5DWF6, Q5ZJ46
XM_046907885.1 → XP_046763841.1 GA-binding protein alpha chain isoform X1

UniProtKB/TrEMBL

Q5DWF6, Q5ZJ46
XM_046907884.1 → XP_046763840.1 GA-binding protein alpha chain isoform X1

UniProtKB/TrEMBL

Q5DWF6, Q5ZJ46