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    • Showing Current items.

    col-144 Nematode cuticle collagen N-terminal domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 179296, updated on 11-Apr-2024

    Summary

    Gene symbol
    col-144
    Gene description
    Nematode cuticle collagen N-terminal domain-containing protein
    Primary source
    WormBase:WBGene00000717
    Locus tag
    CELE_B0222.6
    See related
    AllianceGenome:WB:WBGene00000717
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be a structural constituent of cuticle. Is expressed in hypodermis. [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

    Location:
    chromosome: V
    Exon count:
    2
    Sequence:
    Chromosome: V; NC_003283.11 (9159586..9160642, complement)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Activin_recp domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Putative cuticle collagen 145 Neighboring gene Cuticle collagen 10

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables structural constituent of cuticle IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in anatomical structure development IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    part_of collagen trimer IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    Nematode cuticle collagen N-terminal domain-containing protein
    NP_001367319.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      9159586..9160642 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001380721.2NP_001367319.1  Nematode cuticle collagen N-terminal domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q17458
      Conserved Domains (3) summary
      smart01088
      Location:2156
      Col_cuticle_N; Nematode cuticle collagen N-terminal domain
      PRK07764
      Location:148279
      PRK07764; DNA polymerase III subunits gamma and tau; Validated
      pfam01391
      Location:150206
      Collagen; Collagen triple helix repeat (20 copies)