U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    SFPQ splicing factor proline and glutamine rich [ Gallus gallus (chicken) ]

    Gene ID: 395803, updated on 6-Jun-2024

    Summary

    Go to the top of the page Help
    Symbol
    SFPQprovided by CGNC
    Full Name
    splicing factor proline and glutamine richprovided by CGNC
    Primary source
    CGNC:49487
    See related
    Ensembl:ENSGALG00010013890
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See SFPQ in Genome Data Viewer
    Location:
    chromosome: 23
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 23 NC_052554.1 (4753837..4768451)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 23 NC_052595.1 (4517459..4532073)

    Chromosome 23 - NC_052554.1Genomic Context describing neighboring genes Neighboring gene interferon, alpha-inducible protein 27-like 2 Neighboring gene microRNA 133c Neighboring gene zinc finger MYM-type containing 4 Neighboring gene platelet-activating factor receptor-like Neighboring gene transmembrane protein 35B

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Interaction of protein phosphatase type 1 with a splicing factor. Hirano K, et al. FEBS Lett, 1996 Jul 1. PMID 8766827

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    splicing factor, proline- and glutamine-rich
    Names
    gizzard PTB-associated splicing factor
    splicing factor proline/glutamine-rich (polypyrimidine tract binding protein associated)

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052554.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      4753837..4768451
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046903582.1 → XP_046759538.1  splicing factor, proline- and glutamine-rich isoform X1

      UniProtKB/TrEMBL
      A0A1D5P8I3
      Related
      ENSGALP00010019659.1, ENSGALT00010033302.1

    2. XM_040651773.2 → XP_040507707.1  splicing factor, proline- and glutamine-rich isoform X2

      UniProtKB/TrEMBL
      A0A1D5P8I3
      Conserved Domains (4) summary
      PRK12704
      Location:426 → 537
      PRK12704; phosphodiesterase; Provisional
      cd12948
      Location:382 → 478
      NOPS_PSF; NOPS domain, including C-terminal coiled-coil region, in polypyrimidine tract-binding protein (PTB)-associated-splicing factor (PSF) and similar proteins
      cd12587
      Location:236 → 306
      RRM1_PSF; RNA recognition motif 1 (RRM1) found in vertebrate polypyrimidine tract-binding protein (PTB)-associated-splicing factor (PSF)
      cd12590
      Location:312 → 391
      RRM2_PSF; RNA recognition motif 2 (RRM2) found in vertebrate polypyrimidine tract-binding protein (PTB)-associated-splicing factor (PSF)

    RNA

    1. XR_005841650.2 RNA Sequence

    2. XR_005841651.2 RNA Sequence

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052595.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      4517459..4532073
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046932054.1 → XP_046788010.1  splicing factor, proline- and glutamine-rich isoform X1

      UniProtKB/TrEMBL
      A0A1D5P8I3

    2. XM_040689765.2 → XP_040545699.1  splicing factor, proline- and glutamine-rich isoform X2

      UniProtKB/TrEMBL
      A0A1D5P8I3
      Conserved Domains (3) summary
      smart00360
      Location:238 → 304
      RRM; RNA recognition motif
      PRK12704
      Location:426 → 537
      PRK12704; phosphodiesterase; Provisional
      cd12948
      Location:382 → 478
      NOPS_PSF; NOPS domain, including C-terminal coiled-coil region, in polypyrimidine tract-binding protein (PTB)-associated-splicing factor (PSF) and similar proteins

    RNA

    1. XR_005855802.2 RNA Sequence

    2. XR_005855803.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials