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    SS18 SS18, nBAF chromatin remodeling complex subunit [ Gallus gallus (chicken) ]

    Gene ID: 421085, updated on 5-Mar-2024

    Summary

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    Symbol
    SS18provided by CGNC
    Full Name
    SS18, nBAF chromatin remodeling complex subunitprovided by CGNC
    Primary source
    CGNC:11249
    See related
    Ensembl:ENSGALG00010005508
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See SS18 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 2 NC_052533.1 (103703503..103746316, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 2 NC_052574.1 (103768033..103810839, complement)

    Chromosome 2 - NC_052533.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 521 Neighboring gene uncharacterized LOC107052003 Neighboring gene microRNA 1597 Neighboring gene TATA-box binding protein associated factor 4b Neighboring gene uncharacterized LOC107056037 Neighboring gene potassium channel tetramerization domain containing 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A comprehensive collection of chicken cDNAs. Boardman PE, et al. Curr Biol, 2002 Nov 19. PMID 12445392
    2. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transcription coactivator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein SSXT
    Names
    synovial sarcoma translocation, chromosome 18

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001079479.3 → NP_001072947.1  protein SSXT isoform 2

      See identical proteins and their annotated locations for NP_001072947.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks two in-frame exons, compared to variant 1. The encoded isoform (2) is shorter than isoform 1.
      Source sequence(s)
      JAENSK010000043
      UniProtKB/TrEMBL
      Q5ZMA8
      Related
      ENSGALP00010007733.1, ENSGALT00010013171.1
      Conserved Domains (2) summary
      TIGR01628
      Location:178 → 267
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      pfam05030
      Location:14 → 73
      SSXT; SSXT protein (N-terminal region)

    2. NM_001278150.2 → NP_001265079.2  protein SSXT isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      JAENSK010000043
      UniProtKB/TrEMBL
      A0A1D5PFT4
      Related
      ENSGALP00010007730.1, ENSGALT00010013168.1
      Conserved Domains (2) summary
      TIGR01628
      Location:163 → 283
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      pfam05030
      Location:14 → 73
      SSXT; SSXT protein (N-terminal region)

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052533.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      103703503..103746316 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015277944.4 → XP_015133430.1  protein SSXT isoform X4

      Conserved Domains (2) summary
      TIGR01628
      Location:89 → 209
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      pfam11593
      Location:1 → 143
      Med3; Mediator complex subunit 3 fungal

    2. XM_046925181.1 → XP_046781137.1  protein SSXT isoform X3

      UniProtKB/TrEMBL
      A0A8V0XPC6
      Related
      ENSGALP00010007731.1, ENSGALT00010013169.1

    3. XM_015277943.4 → XP_015133429.1  protein SSXT isoform X2

      UniProtKB/TrEMBL
      A0A1D5PX83
      Related
      ENSGALP00010007734.1, ENSGALT00010013172.1
      Conserved Domains (2) summary
      TIGR01628
      Location:163 → 283
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      pfam05030
      Location:14 → 73
      SSXT; SSXT protein (N-terminal region)

    4. XM_046925191.1 → XP_046781147.1  protein SSXT isoform X4

    5. XM_046925179.1 → XP_046781135.1  protein SSXT isoform X1

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052574.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      103768033..103810839 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046911555.1 → XP_046767511.1  protein SSXT isoform X4

    2. XM_046911554.1 → XP_046767510.1  protein SSXT isoform X3

      UniProtKB/TrEMBL
      A0A8V0XPC6

    3. XM_046911553.1 → XP_046767509.1  protein SSXT isoform X2

      UniProtKB/TrEMBL
      A0A1D5PX83
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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    Molecular Biology Databases
    Research Materials