cyp26b1 cytochrome P450, family 26, subfamily b, polypeptide 1 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: cyp26b1provided by ZNC
Official Full Name: cytochrome P450, family 26, subfamily b, polypeptide 1provided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-2908
See related: Ensembl:ENSDARG00000077121 AllianceGenome:ZFIN:ZDB-GENE-030131-2908
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fc21d03; zgc:76999; wu:fc21d03; wu:fc26h10
Summary: Predicted to enable retinoic acid 4-hydroxylase activity. Involved in negative regulation of retinoic acid receptor signaling pathway. Acts upstream of or within several processes, including animal organ morphogenesis; retinoic acid catabolic process; and tendon formation. Predicted to be located in endoplasmic reticulum membrane. Is expressed in several structures, including brain; cranium; hindbrain neural keel; pectoral fin; and pleuroperitoneal region. Used to study craniosynostosis and osteochondrodysplasia. Orthologous to human CYP26B1 (cytochrome P450 family 26 subfamily B member 1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 7

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	7	NC_007118.7 (25324288..25348597)
105	previous assembly	GRCz10 (GCF_000002035.5)	7	NC_007118.6 (25053131..25077440)

Chromosome 7 - NC_007118.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

we find that Cyp26 function is required in a short time window that overlaps the dynamic window of tenoblast condensation. However, cyp26b1 expression is largely restricted to regions between tenoblast condensations during this time
Title: In vivo zebrafish morphogenesis shows Cyp26b1 promotes tendon condensation and musculoskeletal patterning in the embryonic jaw.
The data demonstrate that RA-induced osteoblast-preosteocyte transitioning has multiple effects on developing bone in Cyp26b1 mutants, ranging from gain to loss of bone, depending on the allelic strength, the developmental stage and the cellular context.
Title: Retinoic acid-induced premature osteoblast-to-preosteocyte transitioning has multiple effects on calvarial development.
cyp26b1 mutants may serve as a model to study the etiology of human vertebral disorders such as Klippel-Feil anomaly
Title: Restriction of retinoic acid activity by Cyp26b1 is required for proper timing and patterning of osteogenesis during zebrafish development.
Cyp26b1 is expressed within osteoblast cells, demonstrating that retinoic acid levels within these cells need to be tightly controlled
Title: Retinoic acid and Cyp26b1 are critical regulators of osteogenesis in the axial skeleton.
effects of the inhibitor rather than excess retinoic acid most closely phenocopied the jaw defects seen with the Cyp26B1 morpholino
Title: The retinoic acid metabolising gene, CYP26B1, patterns the cartilaginous cranial neural crest in zebrafish.
cyp26b1 is involved in limiting the activity of retinoic acid. Zygotic cyp26b1 was localized to presumptive rhombomere 3 and rhombomere 4 at early two-somite (2S) stage. Expression expands anteriorly to include rhombomere 2 at the 10S stage.
Title: Expression of cyp26b1 during zebrafish early development.

Submit: New GeneRIF Correction

General gene information

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Markers

fc21d03.x1 (e-PCR)
- UniSTS:193047

fc26h10.x1 (e-PCR)
- UniSTS:203906

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables 1-hydroxy-2-oxolimonene 1,2-monooxygenase activity	IEA Inferred from Electronic Annotation more info
enables 1-methylnaphthalene hydroxylase activity	IEA Inferred from Electronic Annotation more info
enables 2-hydroxy-phenylacetate hydroxylase activity	IEA Inferred from Electronic Annotation more info
enables 2-methylnaphthalene hydroxylase activity	IEA Inferred from Electronic Annotation more info
enables 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase activity	IEA Inferred from Electronic Annotation more info
enables 2-oxo-delta3-4,5,5-trimethylcyclopentenylacetyl-CoA 1,2-monooxygenase activity	IEA Inferred from Electronic Annotation more info
enables 3,5-xylenol methylhydroxylase activity	IEA Inferred from Electronic Annotation more info
enables 3-HSA hydroxylase activity	IEA Inferred from Electronic Annotation more info
enables 3-methyl-2-oxo-1,2-dihydroquinoline 6-monooxygenase activity	IEA Inferred from Electronic Annotation more info
enables 4-chlorobenzaldehyde oxidase activity	IEA Inferred from Electronic Annotation more info
enables 4-hydroxypyridine-3-hydroxylase activity	IEA Inferred from Electronic Annotation more info
enables all-trans retinoic acid 18-hydroxylase activity	IEA Inferred from Electronic Annotation more info
enables bisphenol A hydroxylase A activity	IEA Inferred from Electronic Annotation more info
enables branched-chain dodecylbenzene sulfonate monooxygenase activity	IEA Inferred from Electronic Annotation more info
enables carbon disulfide oxygenase activity	IEA Inferred from Electronic Annotation more info
enables chlorophenol 4-monooxygenase activity	IEA Inferred from Electronic Annotation more info
enables dimethyl sulfide monooxygenase activity	IEA Inferred from Electronic Annotation more info
enables heme binding	IEA Inferred from Electronic Annotation more info
enables iron ion binding	IEA Inferred from Electronic Annotation more info
enables isobutylamine N-hydroxylase activity	IEA Inferred from Electronic Annotation more info
enables limonene monooxygenase activity	IEA Inferred from Electronic Annotation more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables monooxygenase activity	IBA Inferred from Biological aspect of Ancestor more info
enables monooxygenase activity	IEA Inferred from Electronic Annotation more info
enables oxidoreductase activity	IEA Inferred from Electronic Annotation more info
enables oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEA Inferred from Electronic Annotation more info
enables oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	IEA Inferred from Electronic Annotation more info
enables phenanthrene 1,2-monooxygenase activity	IEA Inferred from Electronic Annotation more info
enables phenanthrene 3,4-monooxygenase activity	IEA Inferred from Electronic Annotation more info
enables phenanthrene 9,10-monooxygenase activity	IEA Inferred from Electronic Annotation more info
enables phenylacetate hydroxylase activity	IEA Inferred from Electronic Annotation more info
enables retinoic acid 4-hydroxylase activity	ISS Inferred from Sequence or Structural Similarity more info
enables styrene monooxygenase activity	IEA Inferred from Electronic Annotation more info
enables tetrahydrofuran hydroxylase activity	IEA Inferred from Electronic Annotation more info
enables thalianol hydroxylase activity	IEA Inferred from Electronic Annotation more info
enables tocotrienol omega-hydroxylase activity	IEA Inferred from Electronic Annotation more info
enables toluene-4-sulfonate monooxygenase activity	IEA Inferred from Electronic Annotation more info
enables xylene monooxygenase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within bone morphogenesis	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within cartilage morphogenesis	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within coronal suture morphogenesis	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within cranial suture morphogenesis	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within embryonic cranial skeleton morphogenesis	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within head morphogenesis	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within hindbrain development	IGI Inferred from Genetic Interaction more info	PubMed
acts_upstream_of_or_within lipid metabolic process	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within negative regulation of retinoic acid receptor signaling pathway	IDA Inferred from Direct Assay more info	PubMed
involved_in negative regulation of retinoic acid receptor signaling pathway	IDA Inferred from Direct Assay more info	PubMed
acts_upstream_of_or_within odontogenesis	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within regulation of ossification	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within retinoic acid catabolic process	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within rhombomere 4 morphogenesis	IGI Inferred from Genetic Interaction more info	PubMed
involved_in sterol metabolic process	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within tendon formation	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
located_in endoplasmic reticulum	IEA Inferred from Electronic Annotation more info
located_in endoplasmic reticulum membrane	IEA Inferred from Electronic Annotation more info
located_in intracellular membrane-bounded organelle	IEA Inferred from Electronic Annotation more info
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: cytochrome P450 26B1

Names: dol; retinoic acid-metabolizing cytochrome; stocksteif

NP_997831.1

EC 1.14.13.-

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.