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    LOC4323864 gibberellin 3-beta-dioxygenase 2-3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4323864, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4323864
    Gene description
    gibberellin 3-beta-dioxygenase 2-3
    Locus tag
    OSNPB_010177400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    D18
    Expression
    Biased expression in flower buds (RPKM 13.3), flowers (RPKM 6.2) and 1 other tissue See more
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    Genomic context

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    See LOC4323864 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (4003156..4005061, complement)

    Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene ubiquitin carboxyl-terminal hydrolase 14 Neighboring gene uncharacterized LOC112937943 Neighboring gene ABC transporter G family member 31-like Neighboring gene aromatic aminotransferase ISS1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Cloning and functional analysis of two gibberellin 3 beta -hydroxylase genes that are differently expressed during the growth of rice. Itoh H, et al. Proc Natl Acad Sci U S A, 2001 Jul 17. PMID 11438692, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables gibberellin 3-beta-dioxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in gibberellin biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to light stimulus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    gibberellin 3-beta-dioxygenase 2-3
    Names
    GA 3beta-hydroxylase
    Os01g0177400
    P0013F10.29

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

      Range
      4003156..4005061 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015779152.2 → XP_015634638.1  gibberellin 3-beta-dioxygenase 2-3

      UniProtKB/Swiss-Prot
      Q0JQ78, Q9FU53
      UniProtKB/TrEMBL
      A2WLB3, Q94IE4
      Conserved Domains (1) summary
      PLN02254
      Location:4 → 351
      PLN02254; gibberellin 3-beta-dioxygenase
    Nucleotide Protein
    Heading Accession and Version

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