LOC4334493 DEAD-box ATP-dependent RNA helicase 37-like [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4334493
Gene description: DEAD-box ATP-dependent RNA helicase 37-like
Locus tag: OSNPB_030805200
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: PL10A; OsPL10a; OsJ_13017
Expression: Ubiquitous expression in leaves before flowering (RPKM 134.6), leaves after flowering (RPKM 101.7) and 6 other tissues See more
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Genomic context

Location:: chromosome: 3

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
102	current	IRGSP-1.0 (GCF_001433935.1)	3	NC_029258.1 (33612510..33617790, complement)

Chromosome 3 - NC_029258.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:: NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables ATP binding	IEA Inferred from Electronic Annotation more info	PubMed
enables RNA binding	IEA Inferred from Electronic Annotation more info	PubMed
enables RNA helicase activity	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: DEAD-box ATP-dependent RNA helicase 37; dEAD-box ATP-dependent RNA helicase 37

Names: LOC_Os03g59050; OSJNBb0015I02.14

XP_015630541.1

EC 3.6.4.13

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001418846.1 → NP_001405775.1 dEAD-box ATP-dependent RNA helicase 37

Status: VALIDATED

Source sequence(s)

AK066048, AU069898, CI127296, CI132604, CI203671, CI310509, CI748010

UniProtKB/Swiss-Prot

B9F6K1, Q75HJ0, Q9MAW9

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

NC_029258.1 Reference IRGSP-1.0 Primary Assembly

Range

33612510..33617790 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_015775055.2 → XP_015630541.1 DEAD-box ATP-dependent RNA helicase 37

UniProtKB/Swiss-Prot

Q75HJ0

Conserved Domains (2) summary

cd18787
Location:401 → 537

SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases

cd17967
Location:175 → 395

DEADc_DDX3_DDX4; DEAD-box helicase domain of ATP-dependent RNA helicases DDX3 and DDX4