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    LOC4330612 aldehyde dehydrogenase family 2 member B7, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330612, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4330612
    Gene description
    aldehyde dehydrogenase family 2 member B7, mitochondrial
    Locus tag
    OSNPB_020730000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    Aldh2a
    Expression
    Broad expression in flowers (RPKM 39.8), milk grains (RPKM 37.5) and 4 other tissues See more
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (30393293..30396790, complement)

    Chromosome 2 - NC_029257.1Genomic Context describing neighboring genes Neighboring gene homeobox-leucine zipper protein HOX16-like Neighboring gene E3 ubiquitin-protein ligase ATL41-like Neighboring gene RING-H2 finger protein ATL40 Neighboring gene U4/U6 small nuclear ribonucleoprotein Prp31 homolog Neighboring gene potassium transporter 25-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029257.1 Chromosome 2 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. The trihelix transcription factor OsGTγ-2 is involved adaption to salt stress in rice. Liu X, et al. Plant Mol Biol, 2020 Jul. PMID 32504260
    2. Expression of a gene encoding mitochondrial aldehyde dehydrogenase in rice increases under submerged conditions. Nakazono M, et al. Plant Physiol, 2000 Oct. PMID 11027709, Free PMC Article
    3. Molecular and cellular characterizations of a cDNA clone encoding a novel isozyme of aldehyde dehydrogenase from rice. Li Y, et al. Gene, 2000 May 16. PMID 10831839
    4. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables aldehyde dehydrogenase (NAD+) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    aldehyde dehydrogenase family 2 member B7, mitochondrial
    Names
    OSJNBa0072H09.28-1
    OSJNBa0072H09.28-2
    Os02g0730000
    P0617A09.7-1
    P0617A09.7-2
    mitochondrial aldehyde dehydrogenase ALDH2a
    putative mitochondrial aldehyde dehydrogenase ALDH2a

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029257.1 Reference IRGSP-1.0 Primary Assembly

      Range
      30393293..30396790 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015769962.2 → XP_015625448.1  aldehyde dehydrogenase family 2 member B7, mitochondrial

      UniProtKB/TrEMBL
      B8AI10, B9F2I7, Q6YWR0, Q9LRI6
      Conserved Domains (1) summary
      PLN02466
      Location:1 → 553
      PLN02466; aldehyde dehydrogenase family 2 member
    Nucleotide Protein
    Heading Accession and Version

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