LOC4342585 probable serine/threonine-protein kinase WNK3 [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4342585
Gene description: probable serine/threonine-protein kinase WNK3
Locus tag: OSNPB_070185000
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: WNK3; OsWNK3; OJ1046_F10.129-1
Expression: Broad expression in flowers (RPKM 4.1), flower buds (RPKM 2.5) and 5 other tissues See more
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Genomic context

Location:: chromosome: 7

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
102	current	IRGSP-1.0 (GCF_001433935.1)	7	NC_029262.1 (4498934..4501958, complement)

Chromosome 7 - NC_029262.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_029262.1 Chromosome 7 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables ATP binding	IEA Inferred from Electronic Annotation more info	PubMed
enables protein serine/threonine kinase activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in intracellular signal transduction	IEA Inferred from Electronic Annotation more info	PubMed
involved_in protein phosphorylation	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: probable serine/threonine-protein kinase WNK3

Names: LOC_Os07g08750; Protein kinase with no lysine 3; putative mitogen activated protein kinase kinase

XP_015646740.1

EC 2.7.11.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001403029.1 → NP_001389958.1 probable serine/threonine-protein kinase WNK3

Status: VALIDATED

Source sequence(s)

AK100930, CI308791, CI554820

UniProtKB/Swiss-Prot

B7ER38, Q0D847, Q8H4Y8

UniProtKB/TrEMBL

B8B7W4

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

NC_029262.1 Reference IRGSP-1.0 Primary Assembly

Range

4498934..4501958 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_015791254.2 → XP_015646740.1 probable serine/threonine-protein kinase WNK3

UniProtKB/Swiss-Prot

Q0D847

Conserved Domains (1) summary

cl21453
Location:32 → 273

PKc_like; Protein Kinases, catalytic domain