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    LOC4326683 WRKY transcription factor 22 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326683, updated on 21-Dec-2023

    Summary

    Gene symbol
    LOC4326683
    Gene description
    WRKY transcription factor 22
    Locus tag
    OSNPB_010624700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    WRKY12; P0006C01.4
    Expression
    Biased expression in roots before flowering (RPKM 5.6), mature seeds (RPKM 1.1) and 2 other tissues See more
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    Genomic context

    See LOC4326683 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (24945319..24947312, complement)

    Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene late embryogenesis abundant protein Lea14-A Neighboring gene protein SGT1 homolog Neighboring gene kinesin-like protein KIN-13B Neighboring gene heat stress transcription factor C-1a-like

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General protein information

    Preferred Names
    WRKY transcription factor 22
    Names
    DNA-binding protein WRKY3-like
    Os01g0624700

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

      Range
      24945319..24947312 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015785114.2XP_015640600.1  WRKY transcription factor 22

      UniProtKB/TrEMBL
      A0A0P0V5F9, A0A9K3Y7A5, B9EY50, Q0JL43, Q5ZEB2
      Conserved Domains (1) summary
      smart00774
      Location:178234
      WRKY; DNA binding domain