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    Gpalpp1 GPALPP motifs containing 1 [ Mus musculus (house mouse) ]

    Gene ID: 67467, updated on 30-Apr-2024

    Summary

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    Official Symbol
    Gpalpp1provided by MGI
    Official Full Name
    GPALPP motifs containing 1provided by MGI
    Primary source
    MGI:MGI:1914717
    See related
    Ensembl:ENSMUSG00000022008 AllianceGenome:MGI:1914717
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Kiaa1704; 1200011I18Rik
    Summary
    Orthologous to human GPALPP1 (GPALPP motifs containing 1). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 4.6), bladder adult (RPKM 4.4) and 28 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Gpalpp1 in Genome Data Viewer
    Location:
    14 D3; 14 40.34 cM
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (76323672..76348255, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (76086232..76110815, complement)

    Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene general transcription factor IIF, polypeptide 2 Neighboring gene predicted gene, 36429 Neighboring gene predicted gene, 36477 Neighboring gene STARR-seq mESC enhancer starr_37162 Neighboring gene STARR-seq mESC enhancer starr_37163 Neighboring gene STARR-seq mESC enhancer starr_37165 Neighboring gene nuclear FMR1 interacting protein 1 Neighboring gene STARR-seq mESC enhancer starr_37169 Neighboring gene nuclear encoded tRNA glutamic acid 6 (anticodon TTC)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Hdac4 Interactions in Huntington's Disease Viewed Through the Prism of Multiomics. Federspiel JD, et al. Mol Cell Proteomics, 2019 Aug 9. PMID 31040226, Free PMC Article
    2. Prediction of the coding sequences of mouse homologues of KIAA gene: IV. The complete nucleotide sequences of 500 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries. Okazaki N, et al. DNA Res, 2004 Jun 30. PMID 15368895
    3. Database resources of the National Center for Biotechnology Information. Wheeler DL, et al. Nucleic Acids Res, 2001 Jan 1. PMID 11125038, Free PMC Article
    4. BraInMap Elucidates the Macromolecular Connectivity Landscape of Mammalian Brain. Pourhaghighi R, et al. Cell Syst, 2020 Apr 22. PMID 32325033, Free PMC Article
    5. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article

    See all (15) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    GPALPP motifs-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_026177.3 → NP_080453.2  GPALPP motifs-containing protein 1

      See identical proteins and their annotated locations for NP_080453.2

      Status: VALIDATED

      Source sequence(s)
      AC125128, AK016681, AK033528, AK082912
      Consensus CDS
      CCDS27283.1
      UniProtKB/Swiss-Prot
      Q69ZC8, Q8K2V8
      Related
      ENSMUSP00000022585.4, ENSMUST00000022585.5
      Conserved Domains (1) summary
      pfam12572
      Location:210 → 338
      DUF3752; Protein of unknown function (DUF3752)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000080.7 Reference GRCm39 C57BL/6J

      Range
      76323672..76348255 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036158828.1 → XP_036014721.1  GPALPP motifs-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      Q9D4A1
      Conserved Domains (1) summary
      pfam12572
      Location:47 → 183
      DUF3752; Protein of unknown function (DUF3752)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q69ZC8.2 GenPept UniProtKB/Swiss-Prot:Q69ZC8

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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