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    Pcnx4 pecanex 4 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 690217, updated on 30-Mar-2024

    Summary

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    Official Symbol
    Pcnx4provided by RGD
    Official Full Name
    pecanex 4provided by RGD
    Primary source
    RGD:1582892
    See related
    Ensembl:ENSRNOG00000005568 AllianceGenome:RGD:1582892
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Pcnxl4; RGD1566114
    Summary
    Orthologous to human PCNX4 (pecanex 4). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Brain (RPKM 141.1), Testes (RPKM 72.4) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Pcnx4 in Genome Data Viewer
    Location:
    6q24
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 6 NC_086024.1 (96860960..96906319)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 6 NC_051341.1 (91125063..91170423)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 6 NC_005105.4 (95314867..95452631) , (95353334..95360686)

    Chromosome 6 - NC_086024.1Genomic Context describing neighboring genes Neighboring gene leucine rich repeat containing 9 Neighboring gene uncharacterized LOC102549502 Neighboring gene dehydrogenase/reductase SDR family member 7-like Neighboring gene uncharacterized LOC134479287

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Gene and alternative splicing annotation with AIR. Florea L, et al. Genome Res, 2005 Jan. PMID 15632090, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    pecanex-like protein 4
    Names
    pecanex homolog 4
    pecanex-like 4
    pecanex-like protein C14orf135 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001329383.1 → NP_001316312.1  pecanex-like protein 4

      Status: VALIDATED

      Source sequence(s)
      BC166574, JAXUCZ010000006
      UniProtKB/TrEMBL
      F1M711
      Related
      ENSRNOP00000007369.8, ENSRNOT00000007369.8
      Conserved Domains (1) summary
      pfam05041
      Location:1026 → 1172
      Pecanex_C; Pecanex protein (C-terminus)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086024.1 Reference GRCr8

      Range
      96860960..96906319
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039112963.1 → XP_038968891.1  pecanex-like protein 4 isoform X1

      Conserved Domains (1) summary
      pfam05041
      Location:831 → 977
      Pecanex_C; Pecanex protein (C-terminus)
    Nucleotide Protein Strain
    Heading Accession and Version

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