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    Tsc2 TSC complex subunit 2 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 24855, updated on 6-May-2024

    Summary

    Official Symbol
    Tsc2provided by RGD
    Official Full Name
    TSC complex subunit 2provided by RGD
    Primary source
    RGD:3908
    See related
    Ensembl:ENSRNOG00000011375 AllianceGenome:RGD:3908
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Rc
    Summary
    Enables GTPase activator activity and protein N-terminus binding activity. Involved in several processes, including negative regulation of cell population proliferation; negative regulation of signal transduction; and regulation of neuron projection development. Acts upstream of or within cell projection organization and negative regulation of cell size. Located in several cellular components, including caveola; growth cone; and neuronal cell body. Part of protein-containing complex. Is active in glutamatergic synapse. Used to study autism spectrum disorder; hepatic angiomyolipoma; and renal cell carcinoma. Biomarker of hepatocellular carcinoma. Human ortholog(s) of this gene implicated in hepatic angiomyolipoma; lymphangioleiomyomatosis; medulloblastoma; tuberous sclerosis; and tuberous sclerosis 2. Orthologous to human TSC2 (TSC complex subunit 2). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Brain (RPKM 105.2), Lung (RPKM 105.1) and 9 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Tsc2 in Genome Data Viewer
    Location:
    10q12
    Exon count:
    43
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (14125679..14160317, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (13621135..13655773, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (13962006..13996684, complement)

    Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene RAB26, member RAS oncogene family Neighboring gene transfer RNA serine (anticodon AGA) 42 Neighboring gene polycystin 1, transient receptor potential channel interacting Neighboring gene nth-like DNA glycosylase 1 Neighboring gene NHERF family PDZ scaffold protein 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables 14-3-3 protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables GTPase activator activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables GTPase activator activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables GTPase activator activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables GTPase activator activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables GTPase activator activity TAS
    Traceable Author Statement
    more info
    PubMed 
    enables Hsp90 protein binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables Hsp90 protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables phosphatase binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables phosphatase binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables phosphatase binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables protein homodimerization activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables protein homodimerization activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables protein-containing complex binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables small GTPase binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables small GTPase binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    acts_upstream_of B cell proliferation ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of T cell proliferation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in anoikis IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in anoikis ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of cell population proliferation ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within cell projection organization IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    acts_upstream_of_or_within cell projection organization IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within cellular response to insulin stimulus ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in cellular response to starvation IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in cellular response to starvation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in cellular response to starvation ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in establishment of cell polarity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in excitatory chemical synaptic transmission ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within glucose import ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within heart development ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in inhibitory chemical synaptic transmission ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within negative regulation of B cell proliferation ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within negative regulation of T cell proliferation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of TOR signaling IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in negative regulation of TOR signaling IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in negative regulation of TOR signaling IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within negative regulation of TOR signaling ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of TOR signaling ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of TORC1 signaling IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in negative regulation of TORC1 signaling ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of TORC1 signaling ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in negative regulation of Wnt signaling pathway IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in negative regulation of Wnt signaling pathway IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in negative regulation of axonogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in negative regulation of cell population proliferation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within negative regulation of cell population proliferation ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within negative regulation of cell size IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in negative regulation of epithelial cell proliferation IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in negative regulation of epithelial to mesenchymal transition IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in negative regulation of fibroblast proliferation IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in negative regulation of insulin receptor signaling pathway IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in negative regulation of macroautophagy IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in negative regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    acts_upstream_of_or_within negative regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of pinocytosis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in negative regulation of protein phosphorylation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in negative regulation of vascular endothelial cell proliferation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within neural tube closure ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within positive chemotaxis ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of autophagy ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of cell adhesion IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in positive regulation of dendritic spine development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in positive regulation of fibroblast migration IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within positive regulation of insulin receptor signaling pathway ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of macroautophagy IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within positive regulation of macroautophagy ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of macroautophagy ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of neuron projection development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within positive regulation of transcription by RNA polymerase II ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within protein import into nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within protein localization ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in protein localization to cell surface IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within protein transport into plasma membrane raft ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of cell cycle IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    acts_upstream_of_or_within regulation of endocytosis ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within regulation of insulin receptor signaling pathway ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of postsynapse organization IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in regulation of postsynapse organization IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in regulation of small GTPase mediated signal transduction IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within response to hypoxia ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in social behavior IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of transcription by RNA polymerase II ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
     
    NOT located_in Golgi apparatus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in Golgi apparatus ISO
    Inferred from Sequence Orthology
    more info
     
    part_of TSC1-TSC2 complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of TSC1-TSC2 complex IEA
    Inferred from Electronic Annotation
    more info
     
    part_of TSC1-TSC2 complex ISO
    Inferred from Sequence Orthology
    more info
     
    part_of TSC1-TSC2 complex ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    located_in caveola IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cell projection IDA
    Inferred from Direct Assay
    more info
    PubMed 
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytosol ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    located_in dendrite IDA
    Inferred from Direct Assay
    more info
    PubMed 
    is_active_in glutamatergic synapse IDA
    Inferred from Direct Assay
    more info
    PubMed 
    is_active_in glutamatergic synapse IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    located_in growth cone IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in lysosomal membrane IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in lysosomal membrane ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in lysosomal membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    located_in lysosome ISO
    Inferred from Sequence Orthology
    more info
     
    located_in membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in neuronal cell body IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    NOT located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in perinuclear region of cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in perinuclear region of cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in perinuclear region of cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in postsynaptic density IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in postsynaptic density ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in synapse ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    tuberin
    Names
    renal carcinoma
    tuberous sclerosis 2 homolog protein
    tuberous sclerosis 2 protein homolog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001430002.1NP_001416931.1  tuberin isoform b

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000010
    2. NM_001430003.1NP_001416932.1  tuberin isoform b

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000010
    3. NM_001430004.1NP_001416933.1  tuberin isoform c

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000010
    4. NM_001430005.1NP_001416934.1  tuberin isoform d

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000010
    5. NM_001430006.1NP_001416935.1  tuberin isoform d

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000010
    6. NM_001430007.1NP_001416936.1  tuberin isoform e

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000010
    7. NM_001430008.1NP_001416937.1  tuberin isoform e

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000010
    8. NM_001430011.1NP_001416940.1  tuberin isoform f

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000010
    9. NM_012680.4NP_036812.3  tuberin isoform a

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000010
      Related
      ENSRNOP00000016221.1, ENSRNOT00000016221.4

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086028.1 Reference GRCr8

      Range
      14125679..14160317 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063268444.1XP_063124514.1  tuberin isoform X16

    2. XM_063268436.1XP_063124506.1  tuberin isoform X3

    3. XM_063268441.1XP_063124511.1  tuberin isoform X10

    4. XM_063268440.1XP_063124510.1  tuberin isoform X9

    5. XM_063268438.1XP_063124508.1  tuberin isoform X5

    6. XM_063268437.1XP_063124507.1  tuberin isoform X4

    7. XM_063268443.1XP_063124513.1  tuberin isoform X14

    8. XM_063268442.1XP_063124512.1  tuberin isoform X13

    9. XM_063268435.1XP_063124505.1  tuberin isoform X16

    10. XM_063268434.1XP_063124504.1  tuberin isoform X12

    11. XM_039085236.2XP_038941164.1  tuberin isoform X15

      UniProtKB/TrEMBL
      D3ZLW4
      Conserved Domains (3) summary
      pfam02145
      Location:14971683
      Rap_GAP; Rap/ran-GAP
      pfam03542
      Location:554902
      Tuberin
      pfam11864
      Location:54418
      DUF3384; Domain of unknown function (DUF3384)
    12. XM_063268433.1XP_063124503.1  tuberin isoform X11

    13. XM_063268432.1XP_063124502.1  tuberin isoform X7

    14. XM_039085229.2XP_038941157.1  tuberin isoform X6

      UniProtKB/TrEMBL
      D3ZLW4
      Conserved Domains (3) summary
      pfam02145
      Location:15401726
      Rap_GAP; Rap/ran-GAP
      pfam03542
      Location:554902
      Tuberin
      pfam11864
      Location:54418
      DUF3384; Domain of unknown function (DUF3384)
    15. XM_039085227.2XP_038941155.1  tuberin isoform X3

      UniProtKB/TrEMBL
      D3ZLW4
      Conserved Domains (3) summary
      pfam02145
      Location:15631749
      Rap_GAP; Rap/ran-GAP
      pfam03542
      Location:554902
      Tuberin
      pfam11864
      Location:54418
      DUF3384; Domain of unknown function (DUF3384)
    16. XM_063268439.1XP_063124509.1  tuberin isoform X17

    17. XM_039085230.2XP_038941158.1  tuberin isoform X8

      UniProtKB/TrEMBL
      D3ZLW4
      Conserved Domains (3) summary
      pfam02145
      Location:15251711
      Rap_GAP; Rap/ran-GAP
      pfam03542
      Location:525864
      Tuberin
      pfam11864
      Location:54419
      DUF3384; Domain of unknown function (DUF3384)
    18. XM_039085235.2XP_038941163.1  tuberin isoform X14

      UniProtKB/TrEMBL
      D3ZLW4
      Related
      ENSRNOP00000087212.1
      Conserved Domains (3) summary
      pfam02145
      Location:14971683
      Rap_GAP; Rap/ran-GAP
      pfam03542
      Location:555903
      Tuberin
      pfam11864
      Location:54419
      DUF3384; Domain of unknown function (DUF3384)
    19. XM_039085233.2XP_038941161.1  tuberin isoform X10

      UniProtKB/TrEMBL
      D3ZLW4
      Conserved Domains (3) summary
      pfam02145
      Location:15201706
      Rap_GAP; Rap/ran-GAP
      pfam03542
      Location:555903
      Tuberin
      pfam11864
      Location:54419
      DUF3384; Domain of unknown function (DUF3384)
    20. XM_039085234.2XP_038941162.1  tuberin isoform X13

      UniProtKB/TrEMBL
      D3ZLW4
      Conserved Domains (3) summary
      pfam02145
      Location:14981684
      Rap_GAP; Rap/ran-GAP
      pfam03542
      Location:555903
      Tuberin
      pfam11864
      Location:54419
      DUF3384; Domain of unknown function (DUF3384)
    21. XM_039085232.2XP_038941160.1  tuberin isoform X9

      UniProtKB/TrEMBL
      D3ZLW4
      Conserved Domains (3) summary
      pfam02145
      Location:15211707
      Rap_GAP; Rap/ran-GAP
      pfam03542
      Location:555903
      Tuberin
      pfam11864
      Location:54419
      DUF3384; Domain of unknown function (DUF3384)
    22. XM_063268431.1XP_063124501.1  tuberin isoform X5

    23. XM_039085226.2XP_038941154.1  tuberin isoform X2

      UniProtKB/TrEMBL
      D3ZLW4
      Conserved Domains (3) summary
      pfam02145
      Location:15631749
      Rap_GAP; Rap/ran-GAP
      pfam03542
      Location:555903
      Tuberin
      pfam11864
      Location:54419
      DUF3384; Domain of unknown function (DUF3384)
    24. XM_039085228.2XP_038941156.1  tuberin isoform X4

      UniProtKB/TrEMBL
      D3ZLW4
      Related
      ENSRNOP00000039381.6
      Conserved Domains (3) summary
      pfam02145
      Location:15411727
      Rap_GAP; Rap/ran-GAP
      pfam03542
      Location:555903
      Tuberin
      pfam11864
      Location:54419
      DUF3384; Domain of unknown function (DUF3384)
    25. XM_006245909.5XP_006245971.2  tuberin isoform X1

      UniProtKB/TrEMBL
      A0A0G2JSL4, A6HCU1, D3ZLW4
      Conserved Domains (3) summary
      pfam02145
      Location:15641750
      Rap_GAP; Rap/ran-GAP
      pfam03542
      Location:555903
      Tuberin; Tuberin
      pfam11864
      Location:54466
      DUF3384; Domain of unknown function (DUF3384)
    26. XM_008767544.4XP_008765766.1  tuberin isoform X18

      UniProtKB/TrEMBL
      D3ZLW4
      Conserved Domains (3) summary
      pfam02145
      Location:15051691
      Rap_GAP; Rap/ran-GAP
      pfam03542
      Location:496844
      Tuberin; Tuberin
      pfam11864
      Location:1407
      DUF3384; Domain of unknown function (DUF3384)
    27. XM_063268445.1XP_063124515.1  tuberin isoform X19

    28. XM_039085238.2XP_038941166.1  tuberin isoform X21

      Conserved Domains (2) summary
      pfam03542
      Location:555903
      Tuberin
      pfam11864
      Location:54419
      DUF3384; Domain of unknown function (DUF3384)
    29. XM_039085237.2XP_038941165.1  tuberin isoform X20

      Conserved Domains (2) summary
      pfam03542
      Location:555903
      Tuberin
      pfam11864
      Location:54419
      DUF3384; Domain of unknown function (DUF3384)