U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Ubald1 UBA-like domain containing 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 302941, updated on 5-Mar-2024

    Summary

    Symbol
    Ubald1provided by RGD
    Full Name
    UBA-like domain containing 1provided by RGD
    Primary source
    RGD:1359443
    See related
    Ensembl:ENSRNOG00000027368 AllianceGenome:RGD:1359443
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Fam100a; RGD1359443
    Summary
    Orthologous to human UBALD1 (UBA like domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Thymus (RPKM 48.4), Spleen (RPKM 42.8) and 9 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Ubald1 in Genome Data Viewer
    Location:
    10q12
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (11202197..11206962)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (10695754..10700519)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (10889435..10894200)

    Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene mahogunin ring finger 1 Neighboring gene ribosomal protein L37A, pseudogene 12 Neighboring gene ribosomal protein lateral stalk subunit P0, pseudogene 14 Neighboring gene similar to human chromosome 16 open reading frame 96 Neighboring gene uncharacterized LOC134480753

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General protein information

    Preferred Names
    UBA-like domain-containing protein 1
    Names
    family with sequence similarity 100, member A
    protein FAM100A
    protein FAM100A-like

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001007668.1NP_001007669.1  UBA-like domain-containing protein 1

      See identical proteins and their annotated locations for NP_001007669.1

      Status: VALIDATED

      Source sequence(s)
      BC079459
      UniProtKB/Swiss-Prot
      Q6AXN0
      Related
      ENSRNOP00000033223.3, ENSRNOT00000033695.6
      Conserved Domains (1) summary
      cd14343
      Location:1048
      UBA_F100B_like; UBA-like domain found in protein FAM100B

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086028.1 Reference GRCr8

      Range
      11202197..11206962
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)