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    Cypt3 cysteine-rich perinuclear theca 3 [ Mus musculus (house mouse) ]

    Gene ID: 69361, updated on 8-Feb-2024

    Summary

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    Official Symbol
    Cypt3provided by MGI
    Official Full Name
    cysteine-rich perinuclear theca 3provided by MGI
    Primary source
    MGI:MGI:1916611
    See related
    Ensembl:ENSMUSG00000048573 AllianceGenome:MGI:1916611
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Ckt1r1; 1700006H02Rik
    Expression
    Restricted expression toward testis adult (RPKM 51.5) See more
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    Genomic context

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    See Cypt3 in Genome Data Viewer
    Location:
    X F3; X 68.65 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (152341589..152342431)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (153558593..153559435)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene STARR-seq mESC enhancer starr_48121 Neighboring gene ubiquilin 2 Neighboring gene predicted gene, 39543 Neighboring gene predicted gene, 25793 Neighboring gene predicted gene 8534

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Characterization of a novel postacrosomal perinuclear theca-specific protein, CYPT1. Kitamura K, et al. Biol Reprod, 2004 Dec. PMID 15286030
    2. Identification and expression profiling of 10 novel spermatid expressed CYPT genes. Hansen MA, et al. Mol Reprod Dev, 2006 May. PMID 16477651
    3. A shared promoter region suggests a common ancestor for the human VCX/Y, SPANX, and CSAG gene families and the murine CYPT family. Hansen MA, et al. Mol Reprod Dev, 2008 Feb. PMID 17342728
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Human VCX/Y, SPANX, and CSAG2 gene families together with the murine SPANX gene and the CYPT family may share a common ancestor.
      Title: A shared promoter region suggests a common ancestor for the human VCX/Y, SPANX, and CSAG gene families and the murine CYPT family.
    Submit: New GeneRIF Correction

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 

    General gene information

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    Homology

    Clone Names

    • MGC58437

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    cysteine-rich perinuclear theca 3
    Names
    basic protein CKT1R1
    cysteine-rich perinuclear theca protein 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001310716.1 → NP_001297645.1  cysteine-rich perinuclear theca 3 isoform 1

      See identical proteins and their annotated locations for NP_001297645.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer protein (isoform 1).
      Source sequence(s)
      AL844583, BC048527
      Consensus CDS
      CCDS81188.1
      UniProtKB/TrEMBL
      B1AY64, Q3MSD3
      Related
      ENSMUSP00000108192.2, ENSMUST00000112573.8

    2. NM_173367.3 → NP_775543.2  cysteine-rich perinuclear theca 3 isoform 2

      See identical proteins and their annotated locations for NP_775543.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate in-frame splice site in the coding region, compared to variant 1. The encoded protein (isoform 2) is shorter than isoform 1.
      Source sequence(s)
      AL844583, AV047945, BC048527
      Consensus CDS
      CCDS30483.1
      UniProtKB/TrEMBL
      Q3MSD3, Q80ZR9
      Related
      ENSMUSP00000057687.4, ENSMUST00000056754.4

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      152341589..152342431
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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