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    C4h2orf42 similar to human chromosome 2 open reading frame 42 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 312511, updated on 6-Jun-2024

    Summary

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    Official Symbol
    C4h2orf42provided by RGD
    Official Full Name
    similar to human chromosome 2 open reading frame 42provided by RGD
    Primary source
    RGD:1306746
    See related
    Ensembl:ENSRNOG00000017380 AllianceGenome:RGD:1306746
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1306746
    Summary
    Predicted to be located in nucleoplasm. Predicted to be active in nucleus. Orthologous to human C2orf42 (chromosome 2 open reading frame 42). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Testes (RPKM 74.8), Thymus (RPKM 43.4) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See C4h2orf42 in Genome Data Viewer
    Location:
    4q34
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (120445032..120474227)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (118887688..118916808)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (118240681..118271771)

    Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene transfer RNA glycine (anticodon CCC) 4 Neighboring gene TIA1 cytotoxic granule-associated RNA binding protein Neighboring gene uncharacterized LOC134486603 Neighboring gene uncharacterized LOC134486604 Neighboring gene poly(rC) binding protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
    		  
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein C2orf42 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001107872.3 → NP_001101342.2  uncharacterized protein C2orf42 homolog

      See identical proteins and their annotated locations for NP_001101342.2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000004
      UniProtKB/TrEMBL
      A6IAX1, A6IAX2, B2RYC3, F7FFR6
      Related
      ENSRNOP00000023654.4, ENSRNOT00000023654.6
      Conserved Domains (1) summary
      pfam14952
      Location:16 → 57
      zf-tcix; Putative treble-clef, zinc-finger, Zn-binding

    2. NM_001419487.1 → NP_001406416.1  uncharacterized protein C2orf42 homolog

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000004
      UniProtKB/TrEMBL
      A6IAX1, A6IAX2, B2RYC3, F7FFR6

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086022.1 Reference GRCr8

      Range
      120445032..120474227
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008763074.4 → XP_008761296.1  uncharacterized protein C2orf42 homolog isoform X1

      See identical proteins and their annotated locations for XP_008761296.1

      UniProtKB/TrEMBL
      A6IAX1, A6IAX2, B2RYC3, F7FFR6
      Conserved Domains (1) summary
      pfam14952
      Location:16 → 57
      zf-tcix; Putative treble-clef, zinc-finger, Zn-binding

    2. XM_063286073.1 → XP_063142143.1  uncharacterized protein C2orf42 homolog isoform X1

      UniProtKB/TrEMBL
      A6IAX1, A6IAX2, B2RYC3, F7FFR6

    3. XM_039107616.2 → XP_038963544.1  uncharacterized protein C2orf42 homolog isoform X2

      Conserved Domains (1) summary
      pfam14952
      Location:16 → 32
      zf-tcix; Putative treble-clef, zinc-finger, Zn-binding

    4. XM_008763071.4 → XP_008761293.1  uncharacterized protein C2orf42 homolog isoform X1

      See identical proteins and their annotated locations for XP_008761293.1

      UniProtKB/TrEMBL
      A6IAX1, A6IAX2, B2RYC3, F7FFR6
      Conserved Domains (1) summary
      pfam14952
      Location:16 → 57
      zf-tcix; Putative treble-clef, zinc-finger, Zn-binding

    5. XM_008763073.4 → XP_008761295.1  uncharacterized protein C2orf42 homolog isoform X1

      See identical proteins and their annotated locations for XP_008761295.1

      UniProtKB/TrEMBL
      A6IAX1, A6IAX2, B2RYC3, F7FFR6
      Conserved Domains (1) summary
      pfam14952
      Location:16 → 57
      zf-tcix; Putative treble-clef, zinc-finger, Zn-binding

    6. XM_063286075.1 → XP_063142145.1  uncharacterized protein C2orf42 homolog isoform X2

    7. XM_063286074.1 → XP_063142144.1  uncharacterized protein C2orf42 homolog isoform X2

    RNA

    1. XR_005503222.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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