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    Ypel1 yippee-like 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 100360867, updated on 3-Apr-2024

    Summary

    Official Symbol
    Ypel1provided by RGD
    Official Full Name
    yippee-like 1provided by RGD
    Primary source
    RGD:2321291
    See related
    AllianceGenome:RGD:2321291
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable metal ion binding activity. Orthologous to human YPEL1 (yippee like 1). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Testes (RPKM 299.8), Thymus (RPKM 37.3) and 7 other tissues See more
    Orthologs
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    Genomic context

    See Ypel1 in Genome Data Viewer
    Location:
    11q23
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 11 NC_086029.1 (97426012..97440646, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 11 NC_051346.1 (83921799..83936409, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 11 NC_005110.4 (88171401..88186000, complement)

    Chromosome 11 - NC_086029.1Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 2610318N02 gene like Neighboring gene microRNA 130b Neighboring gene peptidylprolyl isomerase like 2 Neighboring gene mitogen activated protein kinase 1 Neighboring gene protein phosphatase, Mg2+/Mn2+ dependent, 1F

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001426989.2NP_001413918.1  protein yippee-like 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000011
      UniProtKB/TrEMBL
      A6JSN7

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086029.1 Reference GRCr8

      Range
      97426012..97440646 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008768928.4XP_008767150.1  protein yippee-like 1 isoform X1

      See identical proteins and their annotated locations for XP_008767150.1

      UniProtKB/TrEMBL
      A6JSN7, A6K0A1
      Conserved Domains (1) summary
      cl13152
      Location:20108
      RLR_C_like; C-terminal domain of Retinoic acid-inducible gene (RIG)-I-like Receptors, Cereblon (CRBN), and similar protein domains
    2. XM_063270227.1XP_063126297.1  protein yippee-like 1 isoform X2

    3. XM_063270226.1XP_063126296.1  protein yippee-like 1 isoform X2