Cnih2 cornichon family AMPA receptor auxiliary protein 2 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Cnih2provided by RGD
Official Full Name: cornichon family AMPA receptor auxiliary protein 2provided by RGD
Primary source: RGD:1304930
See related: Ensembl:ENSRNOG00000020247 AllianceGenome:RGD:1304930
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: Cnih3; CNIH-2; RGD1304930
Summary: Involved in negative regulation of anterograde synaptic vesicle transport; negative regulation of receptor localization to synapse; and regulation of neurotransmitter receptor activity. Acts upstream of or within glutamatergic synaptic transmission; localization within membrane; and regulation of membrane potential. Located in dendritic shaft and postsynaptic membrane. Part of AMPA glutamate receptor complex. Is active in glutamatergic synapse. Is integral component of postsynaptic density membrane. Orthologous to human CNIH2 (cornichon family AMPA receptor auxiliary protein 2). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Biased expression in Brain (RPKM 81.6), Testes (RPKM 15.6) and 9 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 1q43

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	1	NC_086019.1 (211828791..211834474, complement)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	1	NC_051336.1 (202399416..202405110, complement)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	1	NC_005100.4 (220474485..220480723, complement)

Chromosome 1 - NC_086019.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Mammalian AMPARs commandeer CNIH-2 for use as a bona fide auxiliary subunit that is able to modify receptor signaling.
Title: AMPA receptors commandeer an ancient cargo exporter for use as an auxiliary subunit for signaling.
CNIH-2 modulates neuronal AMPA receptor auxiliary subunit assembly by regulating the number of transmembrane AMPA receptor regulatory proteins within an AMPA receptor complex to modulate receptor gating and pharmacology.
Title: Cornichon-2 modulates AMPA receptor-transmembrane AMPA receptor regulatory protein assembly to dictate gating and pharmacology.
findings show that the majority of AMPARs in the brain are coassembled with CNIH-2 & CNIH-3; cornichons increase surface expression of AMPARs, & alter channel gating by markedly slowing deactivation & desensitization kinetics
Title: Functional proteomics identify cornichon proteins as auxiliary subunits of AMPA receptors.

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General gene information

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Markers

RH141285 (e-PCR)
- UniSTS:223281

Cnih2 (e-PCR), detects polymorphism
- UniSTS:506806

Gene Ontology Provided by RGD

Function	Evidence Code	Pubs
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed

Process	Evidence Code	Pubs
acts_upstream_of_or_within localization within membrane	IDA Inferred from Direct Assay more info	PubMed
involved_in negative regulation of anterograde synaptic vesicle transport	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in negative regulation of receptor localization to synapse	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in regulation of AMPA receptor activity	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within regulation of membrane potential	IDA Inferred from Direct Assay more info	PubMed
acts_upstream_of_or_within synaptic transmission, glutamatergic	IDA Inferred from Direct Assay more info	PubMed

Component	Evidence Code	Pubs
part_of AMPA glutamate receptor complex	IDA Inferred from Direct Assay more info	PubMed
is_active_in dendrite	IBA Inferred from Biological aspect of Ancestor more info
located_in dendrite	ISO Inferred from Sequence Orthology more info
located_in dendrite	ISS Inferred from Sequence or Structural Similarity more info
located_in dendritic shaft	IDA Inferred from Direct Assay more info	PubMed
located_in dendritic spine	ISO Inferred from Sequence Orthology more info
located_in dendritic spine	ISS Inferred from Sequence or Structural Similarity more info
located_in endoplasmic reticulum membrane	IEA Inferred from Electronic Annotation more info
is_active_in glutamatergic synapse	IDA Inferred from Direct Assay more info	PubMed
is_active_in glutamatergic synapse	IMP Inferred from Mutant Phenotype more info	PubMed
located_in postsynaptic density	ISO Inferred from Sequence Orthology more info
located_in postsynaptic density	ISS Inferred from Sequence or Structural Similarity more info
is_active_in postsynaptic density membrane	IDA Inferred from Direct Assay more info	PubMed
located_in postsynaptic membrane	IDA Inferred from Direct Assay more info	PubMed
is_active_in synapse	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: protein cornichon homolog 2

Names: cornichon homolog 2; cornichon homolog 3; cornichon-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001025132.1 → NP_001020303.1 protein cornichon homolog 2

See identical proteins and their annotated locations for NP_001020303.1

Status: PROVISIONAL

Source sequence(s)

BC091325

UniProtKB/Swiss-Prot

Q5BJU5

UniProtKB/TrEMBL

A0A8I6AFE2

Related

ENSRNOP00000027421.6, ENSRNOT00000027421.7

Conserved Domains (1) summary

pfam03311
Location:7 → 151

Cornichon; Cornichon protein

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

NC_086019.1 Reference GRCr8

Range

211828791..211834474 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_017589439.3 → XP_017444928.1 protein cornichon homolog 2 isoform X1

UniProtKB/TrEMBL

A0A8I5ZV84

Related

ENSRNOP00000082060.1

Conserved Domains (1) summary

pfam03311
Location:7 → 135

Cornichon; Cornichon protein
XM_017589440.3 → XP_017444929.1 protein cornichon homolog 2 isoform X2

Conserved Domains (1) summary

pfam03311
Location:19 → 106

Cornichon; Cornichon protein