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    Pxdc1 PX domain containing 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 361238, updated on 5-Mar-2024

    Summary

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    Official Symbol
    Pxdc1provided by RGD
    Official Full Name
    PX domain containing 1provided by RGD
    Primary source
    RGD:1311307
    See related
    Ensembl:ENSRNOG00000017093 AllianceGenome:RGD:1311307
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1311307
    Summary
    Predicted to enable phosphatidylinositol binding activity. Orthologous to human PXDC1 (PX domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Lung (RPKM 345.0), Spleen (RPKM 207.3) and 7 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Pxdc1 in Genome Data Viewer
    Location:
    17p12
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 17 NC_086035.1 (30481336..30510330)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 17 NC_051352.1 (30275998..30304971)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 17 NC_005116.4 (30965420..30994411)

    Chromosome 17 - NC_086035.1Genomic Context describing neighboring genes Neighboring gene high mobility group box 1, pseudogene 2 Neighboring gene family with sequence similarity 50, member B Neighboring gene solute carrier family 22, member 23 Neighboring gene uncharacterized LOC134482704 Neighboring gene proteasome assembly chaperone 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC116297

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables phosphatidylinositol binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    PX domain-containing protein 1
    Names
    PX domain-containing protein C6orf145 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001025719.1 → NP_001020890.1  PX domain-containing protein 1

      See identical proteins and their annotated locations for NP_001020890.1

      Status: PROVISIONAL

      Source sequence(s)
      BC099145
      UniProtKB/Swiss-Prot
      Q4KLK8
      UniProtKB/TrEMBL
      A0A8L2UMR7, A6J7F6
      Related
      ENSRNOP00000056888.3, ENSRNOT00000060143.3
      Conserved Domains (1) summary
      cl02563
      Location:45 → 127
      PX_domain; The Phox Homology domain, a phosphoinositide binding module

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086035.1 Reference GRCr8

      Range
      30481336..30510330
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063276584.1 → XP_063132654.1  PX domain-containing protein 1 isoform X1

    2. XM_006253841.5 → XP_006253903.1  PX domain-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8L2UMR7
      Conserved Domains (1) summary
      cl02563
      Location:45 → 127
      PX_domain; The Phox Homology domain, a phosphoinositide binding module

    RNA

    1. XR_010058897.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q4KLK8.1 GenPept UniProtKB/Swiss-Prot:Q4KLK8

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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