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    Tmem200a transmembrane protein 200A [ Rattus norvegicus (Norway rat) ]

    Gene ID: 498987, updated on 3-Apr-2024

    Summary

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    Official Symbol
    Tmem200aprovided by RGD
    Official Full Name
    transmembrane protein 200Aprovided by RGD
    Primary source
    RGD:1564024
    See related
    Ensembl:ENSRNOG00000047783 AllianceGenome:RGD:1564024
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1564024
    Summary
    Predicted to be integral component of membrane. Orthologous to human TMEM200A (transmembrane protein 200A). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Adrenal (RPKM 200.5), Brain (RPKM 19.8) and 3 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    1p12
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (21142500..21242022)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (19323646..19408324)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (20330670..20413921)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene ribosomal protein S10 like 2 Neighboring gene L3MBTL histone methyl-lysine binding protein 3 Neighboring gene tumor protein, translationally-controlled 1 like 3 Neighboring gene sterile alpha motif domain containing 3 Neighboring gene RNA, U11 small nuclear 3 Neighboring gene high mobility group box 2, pseudogene 6 Neighboring gene uncharacterized LOC120098808 Neighboring gene uncharacterized LOC134482582

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    transmembrane protein 200A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001109135.1 → NP_001102605.1  transmembrane protein 200A

      See identical proteins and their annotated locations for NP_001102605.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473994
      UniProtKB/TrEMBL
      A0A8I5ZSF5, A0A8I6GGC7, A6JPG3
      Related
      ENSRNOP00000080014.1, ENSRNOT00000117886.1
      Conserved Domains (1) summary
      pfam10177
      Location:16 → 161
      DUF2371; uncharacterized conserved protein (DUF2371)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      21142500..21242022
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063270487.1 → XP_063126557.1  transmembrane protein 200A isoform X1

      UniProtKB/TrEMBL
      D3Z9K1

    2. XM_063270483.1 → XP_063126553.1  transmembrane protein 200A isoform X1

      UniProtKB/TrEMBL
      D3Z9K1

    3. XM_063270490.1 → XP_063126560.1  transmembrane protein 200A isoform X1

      UniProtKB/TrEMBL
      D3Z9K1

    4. XM_063270497.1 → XP_063126567.1  transmembrane protein 200A isoform X1

      UniProtKB/TrEMBL
      D3Z9K1

    5. XM_063270504.1 → XP_063126574.1  transmembrane protein 200A isoform X2

      UniProtKB/TrEMBL
      A0A8I6GGC7, A6JPG3

    6. XM_063270500.1 → XP_063126570.1  transmembrane protein 200A isoform X1

      UniProtKB/TrEMBL
      D3Z9K1

    7. XM_063270505.1 → XP_063126575.1  transmembrane protein 200A isoform X2

      UniProtKB/TrEMBL
      A0A8I6GGC7, A6JPG3

    RNA

    1. XR_010055953.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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